(Q73798412)

English

Assignment of enzyme substrate specificity by principal component analysis of aligned protein sequences: an experimental test using DNA glycosylase homologs

scientific article published on 01 July 2000

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

Assignment of enzyme substrate specificity by principal component analysis of aligned protein sequences: an experimental test using DNA glycosylase homologs (English)

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

sequence alignment

1 reference

based on heuristic

inferred from title

author name string

A Gogos

1

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

D Jantz

2

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

S Sentürker

3

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

D Richardson

4

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

M Dizdaroglu

5

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

N D Clarke

6

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

publication date

1 July 2000

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

40

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

1

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

98-105

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

A method to predict functional residues in proteins

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

New class of enzymes acting on damaged DNA

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Atomic structure of the DNA repair [4Fe-4S] enzyme endonuclease III

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Structural basis for the excision repair of alkylation-damaged DNA

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Three-dimensional structure of a DNA repair enzyme, 3-methyladenine DNA glycosylase II, from Escherichia coli.

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Specific recognition of A/G and A/7,8-dihydro-8-oxoguanine (8-oxoG) mismatches by Escherichia coli MutY: removal of the C-terminal domain preferentially affects A/8-oxoG recognition

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

The C-terminal domain of the adenine-DNA glycosylase MutY confers specificity for 8-oxoguanine.adenine mispairs and may have evolved from MutT, an 8-oxo-dGTPase

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Substrate specificities of the ntg1 and ntg2 proteins of Saccharomyces cerevisiae for oxidized DNA bases are not identical

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Characterization of an 8-oxoguanine DNA glycosylase from Methanococcus jannaschii

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Hidden Markov models

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Substrate specificity of the Ogg1 protein of Saccharomyces cerevisiae: excision of guanine lesions produced in DNA by ionizing radiation- or hydrogen peroxide/metal ion-generated free radicals

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

An evolutionary trace method defines binding surfaces common to protein families

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Cloning of a human homolog of the yeast OGG1 gene that is involved in the repair of oxidative DNA damage

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Purification and characterization of Escherichia coli endonuclease III from the cloned nth gene

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Cloning and characterization of a functional human homolog of Escherichia coli endonuclease III

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Purification and properties of the alkylation repair DNA glycosylase encoded the MAG gene from Saccharomyces cerevisiae.

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Base excision of oxidative purine and pyrimidine DNA damage in Saccharomyces cerevisiae by a DNA glycosylase with sequence similarity to endonuclease III from Escherichia coli

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Repair of oxidized DNA bases in the yeast Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

A mammalian DNA repair enzyme that excises oxidatively damaged guanines maps to a locus frequently lost in lung cancer

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Characterization of the recombinant MutY homolog, an adenine DNA glycosylase, from yeast Schizosaccharomyces pombe

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Characterization of a mammalian homolog of the Escherichia coli MutY mismatch repair protein

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

MutY, an adenine glycosylase active on G-A mispairs, has homology to endonuclease III.

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Bacillus subtilis alkA gene encoding inducible 3-methyladenine DNA glycosylase is adjacent to the ada operon

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Purification and cloning of Micrococcus luteus ultraviolet endonuclease, an N-glycosylase/abasic lyase that proceeds via an imino enzyme-DNA intermediate

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Cloning and characterization of hOGG1, a human homolog of the OGG1 gene of Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Molecular cloning and functional analysis of a Schizosaccharomyces pombe homologue of Escherichia coli endonuclease III

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Molecular cloning and functional expression of a human cDNA encoding the antimutator enzyme 8-hydroxyguanine-DNA glycosylase

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Cloning and sequencing a human homolog (hMYH) of the Escherichia coli mutY gene whose function is required for the repair of oxidative DNA damage

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Nucleotide sequence of the Escherichia coli micA gene required for A/G-specific mismatch repair: identity of micA and mutY

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Cloning and expression in Escherichia coli of the OGG1 gene of Saccharomyces cerevisiae, which codes for a DNA glycosylase that excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000701%2940%3A1%3C98%3A%3AAID-PROT110%3E3.0.CO%3B2-S

21 January 2018

Identifiers

10.1002/(SICI)1097-0134(20000701)40:1<98::AID-PROT110>3.0.CO;2-S

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10813834%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q73798412&oldid=1750695605"