(Q75231721)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712689%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

title

Evaluation of fluorescence spectroscopy methods for mapping melted regions of DNA along the transcription pathway (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712689%20AND%20SRC:MED&resulttype=core&format=json

fluorescence spectroscopy

17 November 2019

main subject

0 references

author name string

Craig T Martin

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712689%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

Andrea Ujvári

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712689%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

Chihua Liu

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712689%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

publication date

1 January 2003

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712689%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

published in

Methods in Enzymology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712689%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

volume

371

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712689%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

page(s)

13-33

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712689%20AND%20SRC:MED&resulttype=core&format=json

Use of 2-aminopurine and tryptophan fluorescence as probes in kinetic analyses of DNA polymerase beta

17 November 2019

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Melting of a DNA helix terminus within the active site of a DNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

A fluorescence-based assay for monitoring helicase activity

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Real-time fluorescence assay system for gene transcription: simultaneous observation of protein/DNA binding, localized DNA melting, and mRNA production

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Equilibrium and stopped-flow kinetic studies of interaction between T7 RNA polymerase and its promoters measured by protein and 2-aminopurine fluorescence changes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

A direct real-time spectroscopic investigation of the mechanism of open complex formation by T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Thermodynamic and kinetic measurements of promoter binding by T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Equilibrium and kinetic parameters of the sequence-specific interaction of Escherichia coli RNA polymerase with nontemplate strand oligodeoxyribonucleotides

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Spectroscopic determination of open complex formation at promoters for Escherichia coli RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Structure and dynamics of a fluorescent DNA oligomer containing the EcoRI recognition sequence: fluorescence, molecular dynamics, and NMR studies

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Probing structure and dynamics of DNA with 2-aminopurine: effects of local environment on fluorescence

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Melting and premelting transitions of an oligomer measured by DNA base fluorescence and absorption

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Conformation and dynamics of abasic sites in DNA investigated by time-resolved fluorescence of 2-aminopurine

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Synthesis and fluorescence characterization of pteridine adenosine nucleoside analogs for DNA incorporation.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Fluorescent pteridine nucleoside analogs: a window on DNA interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Fluorescence properties of pteridine nucleoside analogs as monomers and incorporated into oligonucleotides

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Kinetic and thermodynamic basis of promoter strength: multiple steps of transcription initiation by T7 RNA polymerase are modulated by the promoter sequence

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Peculiar 2-aminopurine fluorescence monitors the dynamics of open complex formation by bacteriophage T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

The +2 NTP binding drives open complex formation in T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Kinetic mechanism of transcription initiation by bacteriophage T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Kinetic mechanism of GTP binding and RNA synthesis during transcription initiation by bacteriophage T7 RNA polymerase.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Cloning and expression of the gene for bacteriophage T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Rapid mutagenesis and purification of phage RNA polymerases

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Identification of specific contacts in T3 RNA polymerase-promoter interactions: kinetic analysis using small synthetic promoters

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Fluorescence characterization of the transcription bubble in elongation complexes of T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Identification of a minimal binding element within the T7 RNA polymerase promoter

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Identification of a region of the bacteriophage T3 and T7 RNA polymerases that determines promoter specificity

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Major groove recognition elements in the middle of the T7 RNA polymerase promoter

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Studies of promoter recognition and start site selection by T7 RNA polymerase using a comprehensive collection of promoter variants

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

HU binding to DNA: evidence for multiple complex formation and DNA bending

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Spectroscopic and calorimetric characterizations of DNA duplexes containing 2-aminopurine

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Base stacking and unstacking as determined from a DNA decamer containing a fluorescent base

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Role of DNA flexibility in sequence-dependent activity of uracil DNA glycosylase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Structural basis for initiation of transcription from an RNA polymerase-promoter complex

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: metal-ion and base sequence effects

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Fluorescence properties of a new guanosine analog incorporated into small oligonucleotides

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Substrate binding in vitro and kinetics of RsrI [N6-adenine] DNA methyltransferase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Construction of bacteriophage T7 late promoters with point mutations and characterization by in vitro transcription properties

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Kinetic analysis of T7 RNA polymerase transcription initiation from promoters containing single-stranded regions

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Structure of a T7 RNA polymerase elongation complex at 2.9 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

The stability of abortively cycling T7 RNA polymerase complexes depends upon template conformation

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Promoter clearance by T7 RNA polymerase. Initial bubble collapse and transcript dissociation monitored by base analog fluorescence

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

Multiple structures for the 2-aminopurine-cytosine mispair

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971002-7

7 January 2021

10.1016/S0076-6879(03)71002-7

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712689%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

1 reference