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Analyzing transcription antitermination in lambdoid phages encoding toxin genes
scientific article published on 01 January 2003
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Europe PubMed Central
PubMed publication ID
14712719
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712719%20AND%20SRC:MED&resulttype=core&format=json
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17 November 2019
title
Analyzing transcription antitermination in lambdoid phages encoding toxin genes
(English)
1 reference
stated in
Europe PubMed Central
PubMed publication ID
14712719
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712719%20AND%20SRC:MED&resulttype=core&format=json
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17 November 2019
author name string
Melody N Neely
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1
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Europe PubMed Central
PubMed publication ID
14712719
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712719%20AND%20SRC:MED&resulttype=core&format=json
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17 November 2019
David I Friedman
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2
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Europe PubMed Central
PubMed publication ID
14712719
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712719%20AND%20SRC:MED&resulttype=core&format=json
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17 November 2019
publication date
1 January 2003
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Europe PubMed Central
PubMed publication ID
14712719
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712719%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
published in
Methods in Enzymology
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Europe PubMed Central
PubMed publication ID
14712719
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712719%20AND%20SRC:MED&resulttype=core&format=json
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17 November 2019
volume
371
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Europe PubMed Central
PubMed publication ID
14712719
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712719%20AND%20SRC:MED&resulttype=core&format=json
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17 November 2019
page(s)
418-438
1 reference
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Europe PubMed Central
PubMed publication ID
14712719
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712719%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
cites work
Comparative molecular biology of lambdoid phages
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
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7 January 2021
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inferred from DOI database lookup
Shiga-like toxin-converting phages from Escherichia coli strains that cause hemorrhagic colitis or infantile diarrhea.
1 reference
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7 January 2021
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Vero cytotoxin production in strain of Escherichia coli is determined by genes carried on bacteriophage
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
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7 January 2021
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Cloning of Shiga-like toxin structural genes from a toxin converting phage of Escherichia coli.
1 reference
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Crossref
reference URL
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7 January 2021
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Efficient RecABC-dependent, homologous recombination between coliphage lambda and plasmids requires a phage ninR region gene
1 reference
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Crossref
reference URL
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retrieved
7 January 2021
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inferred from DOI database lookup
Bacteriophage control of bacterial virulence
1 reference
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Crossref
reference URL
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7 January 2021
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inferred from DOI database lookup
Production of Shigella dysenteriae type 1-like cytotoxin by Escherichia coli
1 reference
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7 January 2021
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inferred from DOI database lookup
Surfing on a retrograde wave: how does Shiga toxin reach the endoplasmic reticulum?
1 reference
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Crossref
reference URL
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7 January 2021
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inferred from DOI database lookup
The pathogenic mechanisms of Shiga toxin and the Shiga-like toxins
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Arrangement and functional identification of genes in the regulatory region of lambdoid phage H-19B, a carrier of a Shiga-like toxin.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Iron regulation of Shiga-like toxin expression in Escherichia coli is mediated by the fur locus
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Bacteriophage lambda: alive and well and still doing its thing.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Role for a phage promoter in Shiga toxin 2 expression from a pathogenic Escherichia coli strain.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Functional and genetic analysis of regulatory regions of coliphage H-19B: location of shiga-like toxin and lysis genes suggest a role for phage functions in toxin release.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
N-mediated transcription antitermination in lambdoid phage H-19B is characterized by alternative NUT RNA structures and a reduced requirement for host factors
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Bacteriophages in the evolution of pathogen-host interactions
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
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inferred from DOI database lookup
A theory of modular evolution for bacteriophages
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A segment of the phage HK022 chromosome is a mosaic of other lambdoid chromosomes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Characterization of a bacteriophage that carries the genes for production of Shiga-like toxin 1 in Escherichia coli
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Clustered arginine residues of bacteriophage lambda N protein are essential to antitermination of transcription, but their locale cannot compensate for boxB loop defects
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine-rich motif
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Coliphage λnutL−: A unique class of mutants defective in the site of gene N product utilization for antitermination of leftward transcription
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The nusA recognition site. Alteration in its sequence or position relative to upstream translation interferes with the action of the N antitermination function of phage lambda
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Conservation of genome form but not sequence in the transcription antitermination determinants of bacteriophages lambda, phi 21 and P22.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Lambda nutR mutations convert HK022 Nun protein from a transcription termination factor to a suppressor of termination
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Bacteriophage lambda N-dependent transcription antitermination. Competition for an RNA site may regulate antitermination.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Transcription-dependent competition for a host factor: the function and optimal sequence of the phage lambda boxA transcription antitermination signal.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Thermosensitivity of a DNA recognition site: activity of a truncated nutL antiterminator of coliphage lambda.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Analysis of nutR, a site required for transcription antitermination in phage lambda
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Effects of all single base substitutions in the loop of boxB on antitermination of transcription by bacteriophage lambda's N protein
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Genetic characterization of a bacterial locus involved in the activity of the N function of phage λ
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Requirement for NusG for transcription antitermination in vivo by the lambda N protein
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Transcription antitermination in vitro by lambda N gene product: requirement for a phage nut site and the products of host nusA, nusB, and nusE genes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Recognition of boxA antiterminator RNA by the E. coli antitermination factors NusB and ribosomal protein S10.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structural and functional analyses of the transcription-translation proteins NusB and NusE.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The alpha subunit of RNA polymerase and transcription antitermination
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Studies of novel transducing variants of lambda: dispensability of genes N and Q
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Release of Polarity in Escherichia coli by Gene N of Phage λ: Termination and Antitermination of Transcription
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Altered reading of genetic signals fused to the N operon of bacteriophage λ: Genetic evidence for modification of polymerase by the protein product of the N gene
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Transcripts that increase the processivity and elongation rate of RNA polymerase.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Characterization of the late-gene regulatory region of phage 21.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Bacteriophage control of Shiga toxin 1 production and release by Escherichia coli.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Nucleotide sequence of the Shiga-like toxin genes of Escherichia coli
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structural analysis of phage-borne stx genes and their flanking sequences in shiga toxin-producing Escherichia coli and Shigella dysenteriae type 1 strains
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Spontaneous tandem amplification and deletion of the shiga toxin operon in Shigella dysenteriae 1.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The so-called chromosomal verotoxin genes are actually carried by defective prophages
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Characterization of a Shiga toxin-encoding temperate bacteriophage of Shigella sonnei
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Persisting bacteriophage infections, lysogeny, and phage conversions
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Bacteriophage biology and bacterial virulence
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Purification of Shiga toxin and Shiga-like toxins I and II by receptor analog affinity chromatography with immobilized P1 glycoprotein and production of cross-reactive monoclonal antibodies
1 reference
stated in
Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Construction of an eae deletion mutant of enteropathogenic Escherichia coli by using a positive-selection suicide vector
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2803%2971032-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0076-6879(03)71032-5
1 reference
stated in
Europe PubMed Central
PubMed publication ID
14712719
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712719%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
PubMed publication ID
14712719
1 reference
stated in
Europe PubMed Central
PubMed publication ID
14712719
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14712719%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
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