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Computational protein design
scientific article published on 01 December 2001
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PubMed publication ID
11738180
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11738180%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
review article
1 reference
stated in
Europe PubMed Central
title
Computational protein design
(English)
1 reference
stated in
Europe PubMed Central
PubMed publication ID
11738180
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11738180%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
author name string
C M Kraemer-Pecore
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed publication ID
11738180
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11738180%20AND%20SRC:MED&resulttype=core&format=json
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4 December 2019
A M Wollacott
series ordinal
2
1 reference
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Europe PubMed Central
PubMed publication ID
11738180
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11738180%20AND%20SRC:MED&resulttype=core&format=json
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4 December 2019
J R Desjarlais
series ordinal
3
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Europe PubMed Central
PubMed publication ID
11738180
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11738180%20AND%20SRC:MED&resulttype=core&format=json
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4 December 2019
publication date
1 December 2001
1 reference
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Europe PubMed Central
PubMed publication ID
11738180
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11738180%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
published in
Current Opinion in Chemical Biology
1 reference
stated in
Europe PubMed Central
PubMed publication ID
11738180
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11738180%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
volume
5
1 reference
stated in
Europe PubMed Central
PubMed publication ID
11738180
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11738180%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
issue
6
1 reference
stated in
Europe PubMed Central
PubMed publication ID
11738180
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11738180%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
page(s)
690-695
1 reference
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Europe PubMed Central
PubMed publication ID
11738180
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11738180%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
cites work
Design of peptides and proteins
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
The de novo design of protein structures
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
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inferred from DOI database lookup
Molecular technology: Designing proteins and peptides
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
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inferred from DOI database lookup
Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Optimal sequence selection in proteins of known structure by simulated evolution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
De novo design of the hydrophobic cores of proteins
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Repacking protein cores with backbone freedom: structure prediction for coiled coils
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Protein design automation
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Probing the role of packing specificity in protein design
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
De novo design of the hydrophobic core of ubiquitin
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Hydrophobic core packing and protein design
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Automated design of the surface positions of protein helices
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
De novo protein design: fully automated sequence selection
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
De novo design and structural characterization of proteins and metalloproteins
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
De novo design of helical bundles as models for understanding protein folding and function.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Computer search algorithms in protein modification and design.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: implications for protein design and structural genomics.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
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Trading accuracy for speed: A quantitative comparison of search algorithms in protein sequence design
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Automatic protein design with all atom force-fields by exact and heuristic optimization
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Improved modeling of side-chains in proteins with rotamer-based methods: A flexible rotamer model
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Energy functions for protein design
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Review: protein design--where we were, where we are, where we're going.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
The beta-beta-alpha fold: explorations in sequence space
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Family of G protein alpha chains: amphipathic analysis and predicted structure of functional domains
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Electrostatic interactions in macromolecules: theory and applications
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Tanford-Kirkwood electrostatics for protein modeling.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Increasing protein stability by altering long-range coulombic interactions
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Engineering a thermostable protein via optimization of charge-charge interactions on the protein surface
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Rational Modification of Protein Stability by the Mutation of Charged Surface Residues†
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
To charge or not to charge?
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Preferential heterodimer formation via undercompensated electrostatic interactions.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Altering dimerization specificity by changes in surface electrostatics
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Native protein sequences are close to optimal for their structures
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Prediction of amino acid sequence from structure
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Designing protein beta-sheet surfaces by Z-score optimization.
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Excluded volume in protein side-chain packing.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
A new approach to the design of uniquely folded thermally stable proteins
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Improving the refolding yield of interleukin-4 through the optimization of local interactions
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Protein engineering as a strategy to avoid formation of amyloid fibrils
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of a protein G helix variant suggests the importance of helix propensity and helix dipole interactions in protein design
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Contribution of surface salt bridges to protein stability
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Computational estimation of specific side chain interaction energies in alpha helices
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
De novo protein design. I. In search of stability and specificity.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Achieving stability and conformational specificity in designed proteins via binary patterning
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Computational design of an integrin I domain stabilized in the open high affinity conformation
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Designed protein G core variants fold to native-like structures: Sequence selection by ORBIT tolerates variation in backbone specification
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Computer-based redesign of a protein folding pathway
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Metalloprotein design
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Rational design of nascent metalloenzymes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The rational design of allosteric interactions in a monomeric protein and its applications to the construction of biosensors
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Conversion of a maltose receptor into a zinc biosensor by computational design
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Design, synthesis, and characterization of a novel hemoprotein
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Statistical theory of combinatorial libraries of folding proteins: energetic discrimination of a target structure
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Statistical theory for protein combinatorial libraries. Packing interactions, backbone flexibility, and the sequence variability of a main-chain structure.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Rational evolutionary design: The theory of in vitro protein evolution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Computational method to reduce the search space for directed protein evolution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Solution structure and dynamics of a designed hydrophobic core variant of ubiquitin
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Rotamer strain as a determinant of protein structural specificity
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Hydrophobic core malleability of a de novo designed three-helix bundle protein
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
De novo design of a monomeric helical beta-peptide stabilized by electrostatic interactions.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A designed protein with packing between left-handed and right-handed helices
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Stabilization of coiled-coil peptide domains by introduction of trifluoroleucine
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structural and functional analysis of the mitotic rotamase Pin1 suggests substrate recognition is phosphorylation dependent
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Virtual interaction profiles of proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2801%2900267-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S1367-5931(01)00267-8
1 reference
stated in
Europe PubMed Central
PubMed publication ID
11738180
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11738180%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
PubMed publication ID
11738180
1 reference
stated in
Europe PubMed Central
PubMed publication ID
11738180
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11738180%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
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