(Q77443286)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9782053%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

title

Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9782053%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

author name string

T Hermann

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9782053%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

E Westhof

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9782053%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

publication date

1 October 1998

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9782053%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9782053%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9782053%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

issue

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9782053%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

page(s)

1303-1314

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9782053%20AND%20SRC:MED&resulttype=core&format=json

Ribozymes: a distinct class of metalloenzymes

5 December 2019

cites work

1 reference

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7 January 2021

Metal-binding sites in the major groove of a large ribozyme domain

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7 January 2021

RNA - ligand interactions:(I) magnesium binding sites in yeast tRNAPhe

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7 January 2021

A crystallographic study of metal-binding to yeast phenylalanine transfer RNA

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7 January 2021

Structural analysis of spermine and magnesium ion binding to yeast phenylalanine transfer RNA

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7 January 2021

Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles

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7 January 2021

Three-dimensional structure of a hammerhead ribozyme

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7 January 2021

The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

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7 January 2021

Crystal structure of a group I ribozyme domain: principles of RNA packing

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7 January 2021

Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain

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7 January 2021

Interaction of manganese with fragments, complementary fragment recombinations, and whole molecules of yeast phenylalanine specific transfer RNA

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7 January 2021

Equilibrium binding of magnesium(II) by Escherichia coli tRNAfMet

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7 January 2021

Significance and mechanism of divalent-ion binding to transfer RNA.

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7 January 2021

RNA structure at high resolution

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7 January 2021

Recent solution structures of RNA and its complexes with drugs, peptides and proteins

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7 January 2021

Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine

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7 January 2021

Iron regulatory element and internal loop/bulge structure for ferritin mRNA studied by cobalt(III) hexammine binding, molecular modeling, and NMR spectroscopy

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7 January 2021

Classical electrostatics in biology and chemistry

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7 January 2021

A small angle X-ray scattering study of a fragment derived fromE. coli5S RNA

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7 January 2021

Structural basis for stabilization of Z-DNA by cobalt hexaammine and magnesium cations

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7 January 2021

Three-Dimensional Structure of Yeast Phenylalanine Transfer RNA: Folding of the Polynucleotide Chain

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7 January 2021

Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals

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7 January 2021

Crystallographic refinement of yeast aspartic acid transfer RNA

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7 January 2021

Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA

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7 January 2021

RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA(Asp) anticodon hairpin

1 reference

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7 January 2021

X-ray diffraction study of the zinc(II) binding sites in yeast phenylalanine transfer RNA preferential binding of zinc to guanines in purine-purine sequences

1 reference

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7 January 2021

The structure, function and application of the hammerhead ribozyme

1 reference

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7 January 2021

Ion-induced folding of the hammerhead ribozyme: a fluorescence resonance energy transfer study

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7 January 2021

Role of divalent metal ions in the hammerhead RNA cleavage reaction

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7 January 2021

Evidence for the role of solvated metal hydroxide in the hammerhead cleavage mechanism

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7 January 2021

Evidence for a hydroxide ion bridging two magnesium ions at the active site of the hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900130-0

7 January 2021

Capturing the structure of a catalytic RNA intermediate: the hammerhead ribozyme

1 reference

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7 January 2021

Inhibition of the hammerhead ribozyme cleavage reaction by site-specific binding of Tb

1 reference

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7 January 2021

Mg(2+)-dependent conformational changes in the hammerhead ribozyme

1 reference

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7 January 2021

Divalent metal ions and the internal equilibrium of the hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900130-0

7 January 2021

Molecular dynamics investigations of hammerhead ribozyme RNA

1 reference

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7 January 2021

The structural basis of hammerhead ribozyme self-cleavage

1 reference

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7 January 2021

Aminoglycoside binding to the hammerhead ribozyme: a general model for the interaction of cationic antibiotics with RNA

1 reference

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7 January 2021

The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus

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7 January 2021

Ribosomal RNA identity elements for ricin A-chain recognition and catalysis. Analysis with tetraloop mutants

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7 January 2021

An RNA motif that binds ATP.

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7 January 2021

Structure, recognition and adaptive binding in RNA aptamer complexes

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7 January 2021

RNA pseudoknots. Stability and loop size requirements

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7 January 2021

The sarcin/ricin loop, a modular RNA.

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7 January 2021

Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

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7 January 2021

X-ray analysis of substrate analogs in the ricin A-chain active site

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7 January 2021

Molecular recognition in the FMN-RNA aptamer complex

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7 January 2021

Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex

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7 January 2021

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

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7 January 2021

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

1 reference

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7 January 2021

10.1016/S0969-2126(98)00130-0

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9782053%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

1 reference