(Q82548440)

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The response of amino acid frequencies to directional mutation pressure in mitochondrial genome sequences is related to the physical properties of the amino acids and to the structure of the genetic code

scientific article published on 13 February 2006

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16477524%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

The response of amino acid frequencies to directional mutation pressure in mitochondrial genome sequences is related to the physical properties of the amino acids and to the structure of the genetic code (English)

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16477524%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

author name string

Daniel Urbina

1

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16477524%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Bin Tang

2

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16477524%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Paul G Higgs

3

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16477524%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

publication date

13 February 2006

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Europe PubMed Central

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16 January 2020

Journal of Molecular Evolution

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16477524%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

62

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Europe PubMed Central

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16 January 2020

3

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Europe PubMed Central

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16 January 2020

340-361

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16477524%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

https://scigraph.springernature.com/pub.10.1007/s00239-005-0051-1

0 references

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Hydrophobicity of amino acid residues in globular proteins.

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Mammalian mitochondrial DNA replicates bidirectionally from an initiation zone

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Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis

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Correlations between nucleotide frequencies and amino acid composition in 115 bacterial species

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Two aspects of DNA base composition: G+C content and translation-coupled deviation from intra-strand rule of A = T and G = C.

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The rapid generation of mutation data matrices from protein sequences

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The molecular basis for the genetic code

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The mitochondrial DNA replication bubble has not burst

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Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

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The complete mitochondrial sequence of Tarsius bancanus: evidence for an extensive nucleotide compositional plasticity of primate mitochondrial DNA.

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Detecting gradients of asymmetry in site-specific substitutions in mitochondrial genomes

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Strand asymmetry in human mitochondrial DNA mutations

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Asymmetrical directional mutation pressure in the mitochondrial genome of mammals.

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A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods

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OGRe: a relational database for comparative analysis of mitochondrial genomes.

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Directional mutation pressure and neutral molecular evolution

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On the evolution of the genetic code

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A quantitative measure of error minimization in the genetic code

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Interior and surface of monomeric proteins

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Nucleotide bias causes a genomewide bias in the amino acid composition of proteins.

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Mutation patterns of mitochondrial H- and L-strand DNA in closely related Cyprinid fishes.

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Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins

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Optimality of the genetic code with respect to protein stability and amino-acid frequencies

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A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes

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Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae

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tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

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