(Q82973099)

English

Identification of primary target genes of phytochrome signaling. Early transcriptional control during shade avoidance responses in Arabidopsis

scientific article published on 24 March 2006

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16565297%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Identification of primary target genes of phytochrome signaling. Early transcriptional control during shade avoidance responses in Arabidopsis (English)

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16565297%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Irma Roig-Villanova

1

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16565297%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

4

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16565297%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Jaime F. Martínez-García

5

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16565297%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

author name string

Jordi Bou

2

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16565297%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Céline Sorin

3

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16565297%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

publication date

24 March 2006

1 reference

Europe PubMed Central

PubMed publication ID

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18 January 2020

number of pages

12

1 reference

based on heuristic

inferred from page(s)

Plant Physiology

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16565297%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

141

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16565297%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16565297%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

85-96

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16565297%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Shade avoidance responses are mediated by the ATHB-2 HD-zip protein, a negative regulator of gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Light signal transduction in higher plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arachidonic Acid Alters TomatoHMGExpression and Fruit Growth and Induces 3-Hydroxy-3-Methylglutaryl Coenzyme A Reductase-Independent Lycopene Accumulation

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional Characterization of Phytochrome Interacting Factor 3 in Phytochrome-Mediated Light Signal Transduction

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

COP1, an Arabidopsis regulatory gene, encodes a protein with both a zinc-binding motif and a G beta homologous domain

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New pOp/LhG4 vectors for stringent glucocorticoid-dependent transgene expression in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide insertional mutagenesis of Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Twilight-zone and canopy shade induction of the Athb-2 homeobox gene in green plants.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Negative autoregulation of the Arabidopsis homeobox gene ATHB-2

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple transcription-factor genes are early targets of phytochrome A signaling

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional gene cassettes in development

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the mutational effects of the COP/DET/FUS loci on genome expression profiles reveals their overlapping yet not identical roles in regulating Arabidopsis seedling development

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phytochrome photosensory signalling networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A dynamic balance between gene activation and repression regulates the shade avoidance response in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Overexpression of Phytochrome B Induces a Short Hypocotyl Phenotype in Transgenic Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The COP1-SPA1 interaction defines a critical step in phytochrome A-mediated regulation of HY5 activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleocytoplasmic partitioning of the plant photoreceptors phytochrome A, B, C, D, and E is regulated differentially by light and exhibits a diurnal rhythm

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

LAF1 ubiquitination by COP1 controls photomorphogenesis and is stimulated by SPA1

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phytochrome D acts in the shade-avoidance syndrome in Arabidopsis by controlling elongation growth and flowering time

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gating of the rapid shade-avoidance response by the circadian clock in plants.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The HAT4 gene of Arabidopsis encodes a developmental regulator

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nuclear translocation of the photoreceptor phytochrome B is necessary for its biological function in seedling photomorphogenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Promotion of photomorphogenesis by COP1.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis COP10 is a ubiquitin-conjugating enzyme variant that acts together with COP1 and the COP9 signalosome in repressing photomorphogenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phytochrome-mediated photoperception and signal transduction in higher plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Direct targeting of light signals to a promoter element-bound transcription factor.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinct roles of CONSTANS target genes in reproductive development of Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The degradation of HFR1, a putative bHLH class transcription factor involved in light signaling, is regulated by phosphorylation and requires COP1.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The role of COP1 in repression of Arabidopsis photomorphogenic development

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A genomic analysis of the shade avoidance response in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Targeted destabilization of HY5 during light-regulated development of Arabidopsis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The HAT2 gene, a member of the HD-Zip gene family, isolated as an auxin inducible gene by DNA microarray screening, affects auxin response in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis basic/helix-loop-helix transcription factor family.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptional activation of APETALA1 by LEAFY.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DET1, a negative regulator of light-mediated development and gene expression in arabidopsis, encodes a novel nuclear-localized protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis Athb-2 and -4 genes are strongly induced by far-red-rich light.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Control of photoperiod-regulated tuberization in potato by the Arabidopsis flowering-time gene CONSTANS.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Photoreceptor ubiquitination by COP1 E3 ligase desensitizes phytochrome A signaling

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A homolog of NO APICAL MERISTEM is an immediate target of the floral homeotic genes APETALA3/PISTILLATA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic and developmental control of nuclear accumulation of COP1, a repressor of photomorphogenesis in Arabidopsis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

De-etiolated 1 and damaged DNA binding protein 1 interact to regulate Arabidopsis photomorphogenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phytochrome a overexpression inhibits hypocotyl elongation in transgenic Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Brassinosteroid mutants uncover fine tuning of phytochrome signaling

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic and molecular analysis of an allelic series of cop1 mutants suggests functional roles for the multiple protein domains.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The cell biology of the COP/DET/FUS proteins. Regulating proteolysis in photomorphogenesis and beyond?

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phytochrome E influences internode elongation and flowering time in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A role for brassinosteroids in light-dependent development of Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A simple and rapid method for the preparation of plant genomic DNA for PCR analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16565297

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1104/PP.105.076331

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16565297%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16565297%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

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