Wikidata:WikiProject Haplogroups
Current goal for this project is to store values used by Template:Infobox haplogroup (Q10562645) to Wikidata.
Examples
editExample articles
edit- Other
Properties
editProperties used to describe individual's haplogroup
Title | ID | Data type | Description | Examples | Inverse |
---|---|---|---|---|---|
mtDNA haplogroup | P4425 | Item | mitochondrial DNA haplogroup: mitochondrial DNA haplogroup of a person or organism | Mummy Juanita <mtDNA haplogroup> Haplogroup A | - |
Y-DNA Haplogroup | P4426 | Item | Y-DNA haplogroup and human Y-chromosome DNA haplogroup: Y-DNA haplogroup of a person or organism | Charles Darwin <Y-DNA Haplogroup> Haplogroup R1b | - |
Properties used to describe haplogroup characteristics.
Title | ID | Data type | Description | Examples | Inverse |
---|---|---|---|---|---|
instance of | P31 | Item | instance of: that class of which this subject is a particular example and member; different from P279 (subclass of); for example: K2 is an instance of mountain; volcano is a subclass of mountain (and an instance of volcanic landform) | Haplogroup N <instance of> Human mitochondrial DNA haplogroup | - |
taxon range map image | P181 | Commons media file | range, habitat and map: range map of a taxon | Adenoviridae <taxon range map image> Distribution.dysderidae.1.png | - |
place of birth | P19 | Item | place of birth, maternity hospital and unknown birth place: most specific known birth location of a person, animal or fictional character | Julius Caesar <place of birth> Rome | - |
date of birth | P569 | Point in time | date of birth: date on which the subject was born | Jude Law <date of birth> | - |
earliest date | P1319 | Point in time | earliest date at which an event could have happened. Use as qualifier for other date properties | date of birth of Jesus <earliest date> | - |
latest date | P1326 | Point in time | unknown: latest possible time that something could have occurred. Use as qualifier for other date properties | date of birth of Jesus <latest date> | - |
follows | P155 | Item | follows: immediately prior item in a series of which the subject is a part, preferably use as qualifier of P179 [if the subject has replaced the preceding item, e.g. political offices, use "replaces" (P1365)] | Star Wars: Episode V – The Empire Strikes Back <follows> Star Wars: Episode IV – A New Hope | followed by |
followed by | P156 | Item | followed by: immediately following item in a series of which the subject is a part, preferably use as qualifier of P179 [if the subject has been replaced, e.g. political offices, use "replaced by" (P1366)] | March <followed by> April | follows |
described by source | P1343 | Item | source of information: work where this item is described | Vladimir K. Zworykin <described by source> Brockhaus Enzyklopädie (19 ed.) | - |
short name | P1813 | Monolingual text | abbreviation: short name of a place, organisation, person, journal, wikidata property, etc. Used by some Wikipedia templates. | Orange County <short name> Orange | - |
has part(s) | P527 | Item | has part, consist of and meronymy: part of this subject; inverse property of "part of" (P361). See also "has parts of the class" (P2670). | United States Congress <has part(s)> United States Senate and United States House of Representatives | part of |
does not have part | P3113 | Item | omission: expected part that the item does not have (for qualities, use P6477) | Franklin County State Airport <does not have part> control tower | - |
has part(s) of the class | P2670 | Item | has parts of class: the subject has one or more parts of the object class | University of Cambridge <has part(s) of the class> college of the University of Cambridge | - |
different from | P1889 | Item | different from: item that is different from another item, with which it may be confused | Kowalski <different from> Kowalski | different from |
short name | P1813 | Monolingual text | abbreviation: short name of a place, organisation, person, journal, wikidata property, etc. Used by some Wikipedia templates. | Orange County <short name> Orange | - |
locator map image | P242 | Commons media file | locator map and map: geographic map image which highlights the location of the subject within some larger entity | Prague <locator map image> 2004 Praha.png | - |
RefSeq genome ID | P2249 | External identifier | ID in the RefSeq Genome database | Chlamydia trachomatis D/UW-3/CX chromosome <RefSeq genome ID> NC_000117 | - |
owned by | P127 | Item | proprietor, property and owned by: owner of the subject | Choupette <owned by> Karl Lagerfeld | owner of |
Alternative properties
editNot in use.
Title | ID | Data type | Description | Examples | Inverse |
---|---|---|---|---|---|
detail map | P1621 | Commons media file | map: map containing details about the entire location | Sicily <detail map> Map of region of Sicily, Italy, with provinces-en.svg | - |
next lower rank | P3729 | Item | rank: lower rank or level in a ranked hierarchy like sport league, military ranks. If there are several possible, list each one and qualify with "criterion used" (P1013), avoid using ranks and date qualifiers. For sports leagues/taxa, use specific properties instead. | General of the Army <next lower rank> General of the Armies of the United States | next higher rank |
next higher rank | P3730 | Item | rank: higher rank or level in a ranked hierarchy like sport league, military ranks. If there are several possible, list each one and qualify with "criterion used" (P1013), avoid using ranks and date qualifiers. For sports leagues/taxa, use specific properties instead. | cardinal <next higher rank> pope | next lower rank |
biological variant of | P3433 | Item | a variant of a physical biological entity (e.g., gene sequence, protein sequence, epigenetic mark) | BRAF V600E <biological variant of> BRAF | - |
endemic to | P183 | Item | endemism and endemic species: sole location or habitat type where the taxon lives | Tournefortia acuminata <endemic to> Réunion | - |
SPARQL
editmtDNA
editListing all items which has statement instance of (P31)Human mitochondrial DNA haplogroup (Q1356230)
#mtDNA Haplogroups
SELECT ?item ?itemLabel ?p569 ?p19Label ?p155Label ?p156Label
WHERE
{
?item wdt:P31 wd:Q1356230.
OPTIONAL { ?item wdt:P569 ?p569 } #date of birth
OPTIONAL { ?item wdt:P19 ?p19 } #place of birth
OPTIONAL { ?item wdt:P155 ?p155 } #follows
OPTIONAL { ?item wdt:P156 ?p156 } #followed by
SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
}
Y-DNA
editListing all items which has statement instance of (P31)human Y-chromosome DNA haplogroup (Q428875)
#Y-DNA Haplogroups
SELECT ?item ?itemLabel ?p569 ?p19Label ?p155Label ?p156Label
WHERE
{
?item wdt:P31 wd:Q428875.
OPTIONAL { ?item wdt:P569 ?p569 } #date of birth
OPTIONAL { ?item wdt:P19 ?p19 } #place of birth
OPTIONAL { ?item wdt:P155 ?p155 } #follows
OPTIONAL { ?item wdt:P156 ?p156 } #followed by
SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
}
Statistics
editmtDNA statistics
editNumber of haplogroups | Version | Date | Source | |
PhyloTree | ~5,500 | mtDNA tree Build 17 | 2016-02-18 | [1] |
haplogroup.org | 5,182 | - | 2018-01-06 | [2] |
Wikidata | 143 | - | 2018-01-06 | [3] |
English Wikipedia | 47 | - | 2018-01-06 | [4] |
(Mathematically possible patterns)* | ∼3.4 × 109975 | - | - | [5] |
*Simply calculated from 416,569 with disregarding indel. 16,569 bases (length of rCRS) are lined up in a row. Each base is one of four (A, T, C, or G).
Y-DNA statistics
editNumber of haplogroups | Version | Date | Source | |
Y Chromosome Consortium | 153 | - | 2002 | [6] |
Karafet et al. 2008 | 311 | - | 2008 | [7] |
Wikidata | 77 | - | 2018-01-06 | [8] |
English Wikipedia | 95 | - | 2018-01-06 | [9] |
(Mathematically possible patterns)* | ∼3.4 × 1032511239 | - | - | [10] |
*Calculated from 454,000,000. 54 million bases (rough length of human NRY[11]) are lined up in a row. Each base is one of four (A, T, C, or G).
Tree
editFollowings are current status of haplogroup item pages in Wikidata.
To show haplogroup item in the tree (which is generated by Module:Haplogroup, derivative version of Template:Tree), it's needed to register the followed by (P156) statement at the "parent" haplogroup item page.
For example, to include Haplogroup L4a in the tree, it's needed to register the statement followed by (P156)Haplogroup L4a (Q3510066) in the parent haplogroup Haplogroup L4 item page.
Tree structure is generated by tracking "followed by (P156)" from the root item. If item page has link to Wikipedia (of your setting language), Wikimedia Commons, or haplogroup.org, it is shown next to each haplogroup name. (Do not use haplogroup.org as source but use it to find original sources.)
If there are other data (for example, "date of birth (P569)", "place of birth (P19)", or "locator map image (P242)"), it is shown by clicking [Show detail] button at the top-left of the tree.
mtDNA tree
editStarting from mitochondrial Eve (Q221674), tracking through followed by (P156)
{{ #invoke:Haplogroup | main | firstItemId = Q221674 | maxdepth = 25}}
Lua error in Module:Haplogroup at line 122: bad argument #1 to 'pairs' (table expected, got nil).
Y-DNA tree
editStarting from Y-chromosomal Adam (Q351265), tracking through followed by (P156)
{{ #invoke:Haplogroup | main | firstItemId = Q351265 | maxdepth = 25}}
Lua error in Module:Haplogroup at line 122: bad argument #1 to 'pairs' (table expected, got nil).
templates with Wikidata support
edit- fiwiki (and actual infobox configuration page: w:fi:module:Fr:Infobox/haploryhmä)
Data sources
edit- mtDNA
- phylotree.org - mtDNA tree Build 17 (18 Feb 2016)- mtDNA tree Build 17 (18 Feb 2016) (Q45008912)
- Mannis van Oven on the Human Mitochondrial DNA Phylogeny (June 2011) - Interview with phylotree.org developer
- haplogroup.org - do not use haplogroup.org as source but use it to find original sources.
- Y-DNA
- isogg.org Y-DNA haplogroup tree - ISOGG Y-DNA Haplogroup Tree (Q45105871)
- YFull YTree - do not use YTree as source but use it to see well structured tree.