Wikidata:Property proposal/GTDB taxon

GTDB taxonEdit

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   Under discussion
DescriptionTaxonomic identifier in the Genome Taxonomy Database, a proposed phylogenomic nomenclature of prokaryotes
RepresentsGenome Taxonomy Database (Q104830506)
Data typeExternal identifier
Domainprokaryotes (Q19081)
Allowed values[dpcofgs]__[A-Z][-[:alnum:]_ ]*
Example 1Paenarthrobacter ureafaciens (Q55180430)s__Paenarthrobacter ureafaciens
Example 2CPR group (Q27110262)p__Patescibacteria
Example 3Asgard (Q45003302)p__Asgardarchaeota
Example 4Clostridia (Q132809)c__Clostridia; c__Clostridia_A
Example 5Escherichia coli (Q25419)s__Escherichia coli; s__Escherichia coli_C; s__Escherichia coli_D; s__Escherichia dysenteriae; s__Escherichia fergusonii; s__Escherichia flexneri
Sourcesee Q104830506#P1343
Number of IDs in source> 45,000 (45,416 as of r85)
Expected completenesseventually complete (Q21873974)
Formatter URLhttps://gtdb.ecogenomic.org/tree?r=$1
Robot and gadget jobsmaybe
Applicable "stated in"-valueGenome Taxonomy Database (Q104830506)
Distinct values constraintno
Wikidata projectWikiProject Tree of life (Q8503033)

MotivationEdit

The GTDB provides a "clean", if unorthodox, tree of life without paraphyletic or oddly-ranked groups. It is especially helpful to provide GTDB links on taxa that are known to be weird themselves or include such taxa. Artoria2e5 (talk) 05:40, 2 February 2021 (UTC)

DiscussionEdit

99of9
Achim Raschka (talk)
Andrawaag (talk)
Brya (talk)
CanadianCodhead (talk)
Canley
Circeus
Dan Koehl (talk)
Daniel Mietchen (talk)
Enwebb
Faendalimas
FelixReimann (talk)
Hyperik (talk)
Infomuse (talk)
Infovarius (talk)
Jean-Marc Vanel
Joel Sachs
Klortho (talk)
Lymantria (talk)
Magnefl (talk)
MPF
Manojk
MargaretRDonald
Mellis (talk)
Michael Goodyear
Mr. Fulano (talk)
Myrmoteras (talk)
Nis Jørgensen
Oronsay
PEAK99
Peter Coxhead
PhiLiP
Andy Mabbett (talk)
Plantdrew
Prot D
pvmoutside
RaboKarbakian
Rod Page
Strobilomyces (talk)
Stuchka (talk)
Succu (talk)
TiagoLubiana (talk)
Tinm
Tom.Reding
TomT0m
Tommy Kronkvist (talk)
Tris T7 TT me
Tubezlob
William Avery
Minorax
Culex
Koala0090
Mike Krüger
Friesen5000
Salgo60
TED
GoEThe (talk)
Estopedist1
Leptospira
  Notified participants of WikiProject Taxonomy

  •   Comment @Artoria2e5: I attempted to link your examples, but the space character breaks linking. How do you plan to handle the ID's with space characters in them? ArthurPSmith (talk) 22:21, 2 February 2021 (UTC)
  • I don't see why Escherichia dysenteriae and Escherichia fergusonii are given as examples for E. coli. They are different species. UWashPrincipalCataloger (talk) 01:05, 5 April 2021 (UTC)