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Complete probabilistic analysis of RNA shapes
scientific article
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instance of
scholarly article
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title
Complete probabilistic analysis of RNA shapes
(English)
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main subject
RNA analysis
1 reference
based on heuristic
inferred from title
author
Björn Voss
object named as
Björn Voss
series ordinal
1
author given names
Björn
author last names
Voss
1 reference
stated in
PubMed
PubMed ID
16480488
retrieved
27 July 2022
Robert Giegerich
series ordinal
2
author given names
Robert
author last names
Giegerich
object named as
Robert Giegerich
1 reference
stated in
PubMed
PubMed ID
16480488
retrieved
27 July 2022
author name string
Marc Rehmsmeier
series ordinal
3
author given names
Marc
author last names
Rehmsmeier
1 reference
stated in
PubMed
PubMed ID
16480488
retrieved
27 July 2022
language of work or name
English
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publication date
2006
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published in
BMC Biology
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volume
4
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issue
1
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page(s)
5
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exact match
https://scigraph.springernature.com/pub.10.1186/1741-7007-4-5
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cites work
RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble
1 reference
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PubMed Central
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19 March 2017
Effective ambiguity checking in biosequence analysis
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retrieved
19 March 2017
Abstract shapes of RNA
1 reference
stated in
PubMed Central
reference URL
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retrieved
19 March 2017
Co-transcriptional folding is encoded within RNA genes
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PubMed Central
reference URL
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retrieved
19 March 2017
Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction
1 reference
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PubMed Central
reference URL
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retrieved
19 March 2017
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
1 reference
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PubMed Central
reference URL
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19 March 2017
A statistical sampling algorithm for RNA secondary structure prediction
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reference URL
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19 March 2017
Mfold web server for nucleic acid folding and hybridization prediction
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PubMed Central
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19 March 2017
Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding
1 reference
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PubMed Central
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19 March 2017
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
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PubMed Central
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19 March 2017
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
1 reference
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PubMed Central
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19 March 2017
Identification of common molecular subsequences
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PubMed Central
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19 March 2017
The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation
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19 March 2017
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
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19 March 2017
On finding all suboptimal foldings of an RNA molecule
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7 April 2017
Evaluating the predictability of conformational switching in RNA.
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12 September 2017
A protein-dependent riboswitch controlling ptsGHI operon expression in Bacillus subtilis: RNA structure rather than sequence provides interaction specificity
1 reference
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PubMed Central
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27 September 2017
No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479382
retrieved
27 September 2017
mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479382
retrieved
27 September 2017
Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479382
retrieved
30 May 2018
Complete suboptimal folding of RNA and the stability of secondary structures.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479382
retrieved
30 May 2018
RNAshapes: an integrated RNA analysis package based on abstract shapes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479382
retrieved
29 November 2018
Factors affecting thermodynamic stabilities of RNA 3 x 3 internal loops
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479382
retrieved
29 November 2018
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479382
retrieved
29 November 2018
Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479382
retrieved
29 November 2018
Prediction and visualization of structural switches in RNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479382
retrieved
29 November 2018
Identifiers
DOI
10.1186/1741-7007-4-5
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Dimensions Publication ID
1042963185
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PMCID
1479382
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PubMed ID
16480488
0 references
ResearchGate publication ID
7297506
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