(Q21132326)

16 August 2022

Jürgen Bauhus

5

Jürgen

Bauhus

1 reference

16 August 2022

6

François Buscot

François

Buscot

1 reference

16 August 2022

2

Tiemo

Kahl

Tiemo Kahl

1 reference

16 August 2022

7

Dirk

Krüger

Dirk Krüger

1 reference

16 August 2022

Björn Hoppe

1

Björn

Hoppe

1 reference

24505405

16 August 2022

Peter Karasch

series ordinal

3

author given names

Peter

author last names

Karasch

1 reference

24505405

Creative Commons Attribution 4.0 International

16 August 2022

language of work or name

English

0 references

publication date

2014

0 references

published in

PLOS One

0 references

volume

9

0 references

issue

2

0 references

page(s)

e88141

0 references

copyright license

start time

5 February 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

maintained by WikiProject

1 reference

phyloXML: XML for evolutionary biology and comparative genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Cytoscape: a software environment for integrated models of biomolecular interaction networks

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

ProtTest: selection of best-fit models of protein evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

WebLogo: A Sequence Logo Generator

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

A simple method for displaying the hydropathic character of a protein

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Application of phylogenetic networks in evolutionary studies

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Nitrogenase gene diversity and microbial community structure: a cross-system comparison

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Bacterial-fungal interactions: hyphens between agricultural, clinical, environmental, and food microbiologists

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

UCHIME improves sensitivity and speed of chimera detection

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Search and clustering orders of magnitude faster than BLAST

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Recent developments in the MAFFT multiple sequence alignment program

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

BioPortal: ontologies and integrated data resources at the click of a mouse

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Microbial interactions: from networks to models

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

A global census of nitrogenase diversity

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Review of indicators and field methods for monitoring biodiversity within national forest inventories. Core variable: deadwood

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

A comparison of taxon co-occurrence patterns for macro- and microorganisms

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Spatial scaling of microbial biodiversity

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

The natural history of nitrogen fixation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Cloning, functional organization, transcript studies, and phylogenetic analysis of the complete nitrogenase structural genes (nifHDK2) and associated genes in the archaeon Methanosarcina barkeri 227.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Use of degenerate oligonucleotides for amplification of the nifH gene from the marine cyanobacterium Trichodesmium thiebautii.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

The checkerboard score and species distributions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Decomposition and carbon cycling of dead trees in tropical forests of the central Amazon.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

ALTER: program-oriented conversion of DNA and protein alignments

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Wood decomposition, higher fungi, and their role in nutrient redistribution

30 May 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

Delignification by Wood-Decay Fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

Implementing large-scale and long-term functional biodiversity research: The Biodiversity Exploratories

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

DensiTree: making sense of sets of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

Segregation of nitrogen fixation and oxygenic photosynthesis in the marine cyanobacterium Trichodesmium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

Substrate controls on nitrogen fixation and respiration in woody debris from the Pacific Northwest, USA

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

Carbon allocation in forest ecosystems

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

Bosque: integrated phylogenetic analysis software

21 January 2018

1 reference

12 December 2020

Evolution: spatial scaling of microbial interactions

1 reference

12 December 2020

Temporal and Spatial Distribution of the nifH Gene of N(2) Fixing Bacteria in Forests and Clearcuts in Western Oregon

1 reference

12 December 2020

Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil

1 reference

12 December 2020

Wood-decaying fungi in the forest: conservation needs and management options

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

7 January 2021

Effects of moisture, temperature and decomposition stage on respirational carbon loss from coarse woody debris (CWD) of important European tree species

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

7 January 2021

Creating the CIPRES Science Gateway for inference of large phylogenetic trees

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

7 January 2021

Plant traits and wood fates across the globe: rotted, burned, or consumed?

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

7 January 2021

Dissolved organic carbon from European beech logs: Patterns of input to and retention by surface soil

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

7 January 2021

10.1371/JOURNAL.PONE.0088141

Identifiers

DOI

1 reference

release_jb4sik2eenc4flaxhaujtspab4

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/jb4sik2eenc4flaxhaujtspab4

24 November 2022

mapped directly with Wikidata item

3914273

1 reference

1 reference

3914273

24505405

1 reference