(Q21144504)

English

Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2% of the genome sequence

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Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2% of the genome sequence (English)

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PubMed publication ID

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PubMed publication ID

bacterial genome

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PubMed publication ID

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PubMed publication ID

Treponema pallidum

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PubMed publication ID

whole genome sequencing

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based on heuristic

inferred from title

Erica Sodergren

12

object named as

Erica Sodergren

author given names

Erica

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Sodergren

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PubMed publication ID

17 August 2022

Steven J. Norris

object named as

Steven J Norris

8

author given names

Steven J

author last names

Norris

1 reference

PubMed publication ID

17 August 2022

George Weinstock

object named as

George M Weinstock

13

author given names

George M

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Weinstock

1 reference

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17 August 2022

9

object named as

Donna M Muzny

author given names

Donna M

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Muzny

1 reference

PubMed publication ID

17 August 2022

6

author given names

Xiang

author last names

Qin

object named as

Xiang Qin

1 reference

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17 August 2022

11

author given names

Lucinda L

author last names

Fulton

object named as

Lucinda L Fulton

1 reference

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17 August 2022

Richard A Gibbs

10

author given names

Richard A

author last names

Gibbs

object named as

Richard A Gibbs

1 reference

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17 August 2022

author name string

Darina Cejková

1

author given names

Darina

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Cejková

1 reference

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17 August 2022

Marie Zobaníková

2

author given names

Marie

author last names

Zobaníková

1 reference

PubMed publication ID

17 August 2022

Lei Chen

3

author given names

Lei

author last names

Chen

1 reference

PubMed publication ID

17 August 2022

Petra Pospíšilová

4

author given names

Petra

author last names

Pospíšilová

1 reference

PubMed publication ID

17 August 2022

Michal Strouhal

5

author given names

Michal

author last names

Strouhal

1 reference

PubMed publication ID

17 August 2022

Lenka Mikalová

7

author given names

Lenka

author last names

Mikalová

1 reference

PubMed publication ID

17 August 2022

David Smajs

14

author given names

David

author last names

Smajs

1 reference

PubMed publication ID

17 August 2022

language of work or name

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publication date

January 2012

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PLoS Neglected Tropical Diseases

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6

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1

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e1471

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copyright license

Creative Commons Attribution 2.5 Generic

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Database resources of the National Center for Biotechnology Information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

Rfam: updates to the RNA families database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

Yaws eradication: past efforts and future perspectives

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

The binary protein interactome of Treponema pallidum--the syphilis spirochete

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

Genome sequencing in microfabricated high-density picolitre reactors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

Complete Genome Sequence of Rickettsia typhi and Comparison with Sequences of Other Rickettsiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

GeneMark.hmm: new solutions for gene finding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

Microbial gene identification using interpolated Markov models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001471

21 January 2018

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

Improved microbial gene identification with GLIMMER

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

Complete Genome Sequence of Treponema pallidum, the Syphilis Spirochete

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

A "double adaptor" method for improved shotgun library construction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

Complete genome sequence of Treponema paraluiscuniculi, strain Cuniculi A: the loss of infectivity to humans is associated with genome decay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

19 March 2017

RDP3: a flexible and fast computer program for analyzing recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

7 April 2017

Analyzing the mosaic structure of genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

7 April 2017

Genome analysis of Treponema pallidum subsp. pallidum and subsp. pertenue strains: most of the genetic differences are localized in six regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Surface immunolabeling and consensus computational framework to identify candidate rare outer membrane proteins of Treponema pallidum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

A link between the assembly of flagella and lipooligosaccharide of the Gram-negative bacterium Campylobacter jejuni

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Intragenic tandem repeat variation between Legionella pneumophila strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

The sequence of the acidic repeat protein (arp) gene differentiates venereal from nonvenereal Treponema pallidum subspecies, and the gene has evolved under strong positive selection in the subspecies that causes syphilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Highly conserved surface proteins of oral spirochetes as adhesins and potent inducers of proinflammatory and osteoclastogenic factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Molecular studies in Treponema pallidum evolution: toward clarity?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

A novel Treponema pallidum antigen, TP0136, is an outer membrane protein that binds human fibronectin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

The bacterial species definition in the genomic era.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Molecular differentiation of Treponema pallidum subspecies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Purification of Treponema pallidum from Infected Rabbit Tissue: Resolution into Two Treponemal Populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Lipoprotein computational prediction in spirochaetal genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Genome scale identification of Treponema pallidum antigens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Transcriptome of Treponema pallidum: gene expression profile during experimental rabbit infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

The treponematoses as a world problem

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Serodiagnosis of syphilis: antibodies to recombinant Tp0453, Tp92, and Gpd proteins are sensitive and specific indicators of infection by Treponema pallidum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

BAC library of T. pallidum DNA in E. coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

The endemic treponematoses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Evaluation of methods for detecting recombination from DNA sequences: computer simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Biology of Treponema pallidum: correlation of functional activities with genome sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

From microbial genome sequence to applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

The tprK gene is heterogeneous among Treponema pallidum strains and has multiple alleles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Treponema pallidum major sheath protein homologue Tpr K is a target of opsonic antibody and the protective immune response.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Serologic studies of non-venereal treponematoses in infants in Niamey, Niger

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Elongated versions of Vlp surface lipoproteins protect Mycoplasma hyorhinis escape variants from growth-inhibiting host antibodies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Physical map of the genome of Treponema pallidum subsp. pallidum (Nichols)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Genetic relationship between Treponema pallidum and Treponema pertenue, two noncultivable human pathogens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Comparison of major protein antigens and protein profiles of Treponema pallidum and Treponema pertenue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Neuro-ophthalmological study of late yaws and pinta. II. The Caracas project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

The control of endemic treponematoses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Occurrence of congenital, cardiovascular, visceral, neurologic, and neuro-ophthalmologic complications in late yaws: a theme for future research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Polymerase chain reaction and synthetic DNA probes: a means of distinguishing the causative agents of syphilis and yaws?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

12 September 2017

Complete genome sequence and annotation of the Treponema pallidum subsp. pallidum Chicago strain.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

27 September 2017

Tpr homologs in Treponema paraluiscuniculi Cuniculi A strain.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

27 September 2017

Sequence diversity of Treponema pallidum subsp. pallidum tprK in human syphilis lesions and rabbit-propagated isolates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

27 September 2017

Systematic cloning of Treponema pallidum open reading frames for protein expression and antigen discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

27 September 2017

Multiple alleles of Treponema pallidum repeat gene D in Treponema pallidum isolates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

27 September 2017

Gene conversion: a mechanism for generation of heterogeneity in the tprK gene of Treponema pallidum during infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

30 May 2018

Syphilis in pregnancy supervening on yaws: case report.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

30 May 2018

Treponema pallidum subspecies pallidum (Nichols) and Treponema pallidum subspecies pertenue (CDC 2575) differ in at least one nucleotide: comparison of two homologous antigens.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001471

21 January 2018

The flanking region sequences of the 15-kDa lipoprotein gene differentiate pathogenic treponemes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001471

21 January 2018

Mutation discovery in bacterial genomes: metronidazole resistance in Helicobacter pylori.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001471

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001471

21 January 2018

Genome differences between Treponema pallidum subsp. pallidum strain Nichols and T. paraluiscuniculi strain Cuniculi A.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001471

21 January 2018

Molecular evolution of the tprC, D, I, K, G, and J genes in the pathogenic genus Treponema.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001471

21 January 2018

Molecular subtyping of Treponema pallidum subspecies pallidum.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001471

21 January 2018

Molecular characterization and analysis of a gene encoding the acidic repeat protein (Arp) of Treponema pallidum

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001471

21 January 2018

FURTHER OBSERVATIONS ON PARANGI (YAWS)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

29 November 2018

Biology of the treponematoses based on studies carried out at the International Treponematosis Laboratory Center of the Johns Hopkins University under the auspices of the World Health Organization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265458

29 November 2018

[Study of a recently isolated strain of Treponema pertenue.]

1 reference

https://pubmed.ncbi.nlm.nih.gov/22292095

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Opsonic potential, protective capacity, and sequence conservation of the Treponema pallidum subspecies pallidum Tp92

1 reference

https://pubmed.ncbi.nlm.nih.gov/22292095

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[NOTE ON SOME IMMUNOLOGICAL ASPECTS OF THE AFRICAN CYNOCEPHALUS. 1. ANTIGENIC RELATIONSHIP OF ITS GAMMA GLOBULIN WITH HUMAN GAMMA GLOBULIN. 2. GUINEAN ENDEMIC FOCUS OF TREPONEMATOSIS]

1 reference

https://pubmed.ncbi.nlm.nih.gov/22292095

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Possible emergence of new geminiviruses by frequent recombination

1 reference

https://pubmed.ncbi.nlm.nih.gov/22292095

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PNTD.0001471

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

0 references

PubMed publication ID

0 references

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0 references

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