(Q21144934)

3

object named as

Sergios-Orestis Kolokotronis

Sergios-Orestis

Kolokotronis

1 reference

17 August 2022

Alexandros Stamatakis

5

object named as

Alexandros Stamatakis

Alexandros

Robert Anthony Martienssen

Stamatakis

1 reference

17 August 2022

Ernest K Lee

1

Ernest K

Lee

1 reference

17 August 2022

12

Gloria Coruzzi

Gloria

Coruzzi

1 reference

17 August 2022

11

Robert A Martienssen

Robert A

Martienssen

1 reference

17 August 2022

Angélica Cibrián-Jaramillo

2

Angelica

Cibrian-Jaramillo

Angelica Cibrian-Jaramillo

1 reference

17 August 2022

Dennis William Stevenson

9

Dennis Wm

Stevenson

Dennis Wm Stevenson

1 reference

17 August 2022

Manpreet S Katari

4

Manpreet S

Katari

1 reference

17 August 2022

Michael Ott

6

Michael

Ott

1 reference

17 August 2022

Joanna C Chiu

7

Joanna C

Chiu

1 reference

17 August 2022

Damon P Little

8

Damon P

Little

1 reference

17 August 2022

W Richard McCombie

10

W Richard

McCombie

1 reference

17 August 2022

Rob Desalle

13

Rob

Creative Commons Attribution 4.0 International

Desalle

1 reference

17 August 2022

language of work or name

English

0 references

publication date

December 2011

0 references

published in

PLOS Genetics

0 references

volume

7

0 references

issue

12

0 references

page(s)

e1002411

0 references

copyright license

start time

15 December 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants

19 March 2017

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19 March 2017

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Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

19 March 2017

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Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids

19 March 2017

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The deepest divergences in land plants inferred from phylogenomic evidence

19 March 2017

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Evolution of the angiosperms: calibrating the family tree

19 March 2017

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Gene ontology: tool for the unification of biology

19 March 2017

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Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers

19 March 2017

1 reference

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Identifying the Basal Angiosperm Node in Chloroplast Genome Phylogenies: Sampling One's Way Out of the Felsenstein Zone

19 March 2017

1 reference

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Codon-substitution models for heterogeneous selection pressure at amino acid sites

19 March 2017

1 reference

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A rapid bootstrap algorithm for the RAxML Web servers

19 March 2017

1 reference

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

19 March 2017

1 reference

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Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

19 March 2017

1 reference

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The rapid generation of mutation data matrices from protein sequences

19 March 2017

1 reference

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Molecular phylogenetic analysis of uniovulate Euphorbiaceae (Euphorbiaceae sensu stricto) using plastid RBCL and TRNL-F DNA sequences

19 March 2017

1 reference

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Not so different after all: a comparison of methods for detecting amino acid sites under selection

19 March 2017

1 reference

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Statistical methods for detecting molecular adaptation

19 March 2017

1 reference

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A codon-based model of nucleotide substitution for protein-coding DNA sequences

19 March 2017

1 reference

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A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

19 March 2017

1 reference

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

MIPS: analysis and annotation of genome information in 2007

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Phylogenetic analysis of rbcL sequences identifies Acorus calamus as the primal extant monocotyledon

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

HyPhy: hypothesis testing using phylogenies

19 March 2017

1 reference

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Recent developments in the MAFFT multiple sequence alignment program

24 March 2017

1 reference

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Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

7 April 2017

1 reference

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Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

7 April 2017

1 reference

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Rates of molecular evolution are linked to life history in flowering plants

7 April 2017

1 reference

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A new method for calculating evolutionary substitution rates

7 April 2017

1 reference

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Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Phylogenetic relationships among seed plants: Persistent questions and the limits of molecular data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

The meaning of Darwin's 'abominable mystery'.

12 September 2017

1 reference

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Control of female gamete formation by a small RNA pathway in Arabidopsis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Using whole genome presence/absence data to untangle function in 12 Drosophila genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Gene-specific signatures of elevated non-synonymous substitution rates correlate poorly across the Plasmodium genus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

The small interfering RNA production pathway is required for shoot meristem initiation in rice

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Common functions for diverse small RNAs of land plants

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

LACHESIS restricts gametic cell fate in the female gametophyte of Arabidopsis.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Inferring angiosperm phylogeny from EST data with widespread gene duplication

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Genomic insights into positive selection

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

OrthologID: automation of genome-scale ortholog identification within a parsimony framework

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Differential methylation of genes and repeats in land plants

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Explosive radiation of Malpighiales supports a mid-cretaceous origin of modern tropical rain forests

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Abiotic stress alters transcript profiles and activity of glutathione S-transferase, glutathione peroxidase, and glutathione reductase in Euphorbia esula.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Spatially restricted microRNA directs leaf polarity through ARGONAUTE1.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Peroxisomes from pepper fruits (Capsicum annuum L.): purification, characterisation and antioxidant activity.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

The major clades of MADS-box genes and their role in the development and evolution of flowering plants.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Apomorphy distribution is an important aspect of cladogram symmetry

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

The root of the angiosperms revisited

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Multiple sources of character information and the phylogeny of Hawaiian drosophilids

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Molecular data from the chloroplast rpoC1 gene suggest a deep and distinct dichotomy of contemporary spermatophytes into two monophyla: gymnosperms (including Gnetales) and angiosperms

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

The structural basis of molecular adaptation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Noncoding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support gnetalean affinities of angiosperms

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Oxidative stress and antioxidants in tomato (Solanum lycopersicum) plants subjected to boron toxicity.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Angiosperm divergence times: the effect of genes, codon positions, and time constraints

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240601

Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL

30 May 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

The position of gnetales among seed plants: overcoming pitfalls of chloroplast phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

VirtualPlant: a software platform to support systems biology research.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

The evolution of gymnosperms redrawn by phytochrome genes: the Gnetatae appear at the base of the gymnosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

A Reevaluation of Seed Plant Phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

Functional Constraints and rbcL Evidence for Land Plant Phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

The Mostly Male Theory of Flower Evolutionary Origins: From Genes to Fossils

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

Are Mitochondrial Genes Useful for the Analysis of Monocot Relationships?

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

A Phylogeny of the Monocots, as Inferred from rbcL and atpA Sequence Variation, and a Comparison of Methods for Calculating Jackknife and Bootstrap Values

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

Statistical Methods in Molecular Evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

Glutathione conjugates in the vacuole are degraded by gamma-glutamyl transpeptidase GGT3 in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

Glutathione peroxidase genes in Arabidopsis are ubiquitous and regulated by abiotic stresses through diverse signaling pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

SDE5, the putative homologue of a human mRNA export factor, is required for transgene silencing and accumulation of trans-acting endogenous siRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

C(4) eudicots are not younger than C(4) monocots

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

TNT, a free program for phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

How many bootstrap replicates are necessary?

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

In vitro antioxidant activity of Juglans regia L. bark extract and its protective effect on cyclophosphamide-induced urotoxicity in mice

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22194700

12 December 2020

inferred from PubMed ID database lookup

In search of molecular darwinism

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22194700

12 December 2020

inferred from PubMed ID database lookup

Molecular biology. Small RNA makes its move

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22194700

12 December 2020

inferred from PubMed ID database lookup

Lignophyte Phylogeny and the Evolution of Spermatophytes: A Numerical Cladistic Analysis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002411

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1371/JOURNAL.PGEN.1002411

1 reference

4377373

4377373

1 reference

1 reference

1 reference