(Q21245309)

Dimensions Publication ID

Dimensions

1048240307

18 August 2022

Brian Oliver

series ordinal

2

author given names

Brian

author last names

Oliver

1 reference

Dimensions Publication ID

Dimensions

1048240307

Creative Commons Attribution 2.0 Generic

18 August 2022

language of work or name

English

0 references

publication date

2011

0 references

31 May 2011

5 references

19 September 2019

22 October 2019

28 January 2021

7 April 2021

29 July 2022

5 references

19 September 2019

22 October 2019

28 January 2021

7 April 2021

29 July 2022

9

0 references

page(s)

34

0 references

issue

1

0 references

copyright license

5 references

19 September 2019

22 October 2019

28 January 2021

7 April 2021

https://scigraph.springernature.com/pub.10.1186/1741-7007-9-34

29 July 2022

0 references

0 references

cites work

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

19 March 2017

1 reference

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Biases in Illumina transcriptome sequencing caused by random hexamer priming

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

TopHat: discovering splice junctions with RNA-Seq

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

19 March 2017

1 reference

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RNA-Seq: a revolutionary tool for transcriptomics

19 March 2017

1 reference

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

19 March 2017

1 reference

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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Evaluation of gene expression measurements from commercial microarray platforms

19 March 2017

1 reference

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Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

19 March 2017

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

19 March 2017

1 reference

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The Sequence of the Human Genome

19 March 2017

1 reference

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Exploration, normalization, and summaries of high density oligonucleotide array probe level data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

The genome sequence of Drosophila melanogaster

19 March 2017

1 reference

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Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

19 March 2017

1 reference

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Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

19 March 2017

1 reference

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Quantitative monitoring of gene expression patterns with a complementary DNA microarray

19 March 2017

1 reference

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The missing graphical user interface for genomics

19 March 2017

1 reference

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Next-generation DNA sequencing methods

19 March 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

19 March 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Effects of atmospheric ozone on microarray data quality

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data

19 March 2017

1 reference

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The developmental transcriptome of Drosophila melanogaster

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

7 April 2017

1 reference

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A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

7 April 2017

1 reference

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

7 April 2017

1 reference

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RNA maps reveal new RNA classes and a possible function for pervasive transcription

7 April 2017

1 reference

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Genome-wide transcription and the implications for genomic organization

7 April 2017

1 reference

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Genetic dissection of transcriptional regulation in budding yeast

7 April 2017

1 reference

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A comparison of RNA-Seq and high-density exon array for detecting differential gene expression between closely related species

7 April 2017

1 reference

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The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Consistency of predictive signature genes and classifiers generated using different microarray platforms.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Making informed choices about microarray data analysis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Modeling non-uniformity in short-read rates in RNA-Seq data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Statistical design and analysis of RNA sequencing data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Unlocking the secrets of the genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Conservation of core gene expression in vertebrate tissues

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Estimating accuracy of RNA-Seq and microarrays with proteomics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Sex-specific splicing in Drosophila: widespread occurrence, tissue specificity and evolutionary conservation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Constraint and turnover in sex-biased gene expression in the genus Drosophila

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

How high is the level of technical noise in microarray data?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

The expression profile of purified Drosophila germline stem cells

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

RNA-Seq: a method for comprehensive transcriptome analysis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

Gene expression during the life cycle of Drosophila melanogaster.

30 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1741-7007-9-34

Multiple-laboratory comparison of microarray platforms

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1741-7007-9-34

Sebida: a database for the functional and evolutionary analysis of genes with sex-biased expression.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1741-7007-9-34

Analysis of human transcriptomes.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3104486

29 November 2018

Identifiers

DOI

10.1186/1741-7007-9-34

1 reference

Dimensions Publication ID

620607

1048240307

0 references

Internet Archive ID

pubmed-PMC3104486

0 references

620607

1 reference

1 reference

1 reference