Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q24655505)
Watch
English
TopHat: discovering splice junctions with RNA-Seq
scientific article
In more languages
edit
Statements
instance of
scholarly article
0 references
title
TopHat: discovering splice junctions with RNA-Seq
(English)
0 references
main subject
computational mathematics
0 references
RNA sequencing
0 references
TopHat
0 references
RNA-Seq
1 reference
based on heuristic
inferred from title
author
Steven Salzberg
series ordinal
3
0 references
Lior Pachter
series ordinal
2
object named as
Lior Pachter
0 references
Cole Trapnell
series ordinal
1
object named as
Cole Trapnell
0 references
language of work or name
English
0 references
publication date
1 May 2009
0 references
published in
Bioinformatics
1 reference
stated in
PubMed
volume
25
0 references
page(s)
1105-11
0 references
issue
9
0 references
describes a project that uses
RNA-Seq
1 reference
based on heuristic
inferred from title
cites work
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
7 April 2017
Mapping short DNA sequencing reads and calling variants using mapping quality scores
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
7 April 2017
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
7 April 2017
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
7 April 2017
BLAT—The BLAST-Like Alignment Tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
7 April 2017
Isolation of a brefeldin A-inhibited guanine nucleotide-exchange protein for ADP ribosylation factor (ARF) 1 and ARF3 that contains a Sec7-like domain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
7 April 2017
Mapping and quantifying mammalian transcriptomes by RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
7 April 2017
Alternative isoform regulation in human tissue transcriptomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
7 April 2017
Stem cell transcriptome profiling via massive-scale mRNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
7 April 2017
Rapid cDNA sequencing (expressed sequence tags) from a directionally cloned human infant brain cDNA library
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
7 April 2017
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
7 April 2017
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
7 April 2017
Optimal spliced alignments of short sequence reads
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
28 September 2017
SeqAn an efficient, generic C++ library for sequence analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
28 September 2017
AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
28 September 2017
Whole-genome sequencing and variant discovery in C. elegans.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
28 November 2018
Intron size in mammals: complexity comes to terms with economy.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2672628
retrieved
28 November 2018
Replacing suffix trees with enhanced suffix arrays
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP120
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1093/BIOINFORMATICS/BTP120
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
154823
DBLP publication ID
journals/bioinformatics/TrapnellPS09
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
OpenCitations bibliographic resource ID
154823
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
154823
PMCID
2672628
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
154823
PubMed ID
19289445
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
154823
ResearchGate publication ID
24203835
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
