(Q21263170)

22 June 2017

title

Microarray analysis of ncRNA expression patterns in Caenorhabditis elegans after RNAi against snoRNA associated proteins (English)

1 reference

22 June 2017

main subject

Caenorhabditis elegans

0 references

Runsheng Chen

4

Runsheng

Chen

1 reference

Dimensions

18 August 2022

author name string

Muhammad Nauman Aftab

series ordinal

1

author given names

Muhammad Nauman

author last names

Aftab

2 references

22 June 2017

18 August 2022

Housheng He

series ordinal

2

author given names

Housheng

author last names

He

2 references

22 June 2017

18 August 2022

Geir Skogerbø

series ordinal

3

author given names

Geir

author last names

Skogerbø

2 references

22 June 2017

18 August 2022

language of work or name

English

0 references

publication date

11 June 2008

1 reference

22 June 2017

1 reference

22 June 2017

volume

9

1 reference

22 June 2017

issue

1

0 references

page(s)

278

1 reference

Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression

22 June 2017

cites work

1 reference

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Characterization of a highly variable eutherian microRNA gene

19 March 2017

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19 March 2017

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Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins

19 March 2017

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Conserved stem II of the box C/D motif is essential for nucleolar localization and is required, along with the 15.5K protein, for the hierarchical assembly of the box C/D snoRNP

19 March 2017

1 reference

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A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP

19 March 2017

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Conserved composition of mammalian box H/ACA and box C/D small nucleolar ribonucleoprotein particles and their interaction with the common factor Nopp140

19 March 2017

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A telomerase component is defective in the human disease dyskeratosis congenita

19 March 2017

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Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs

19 March 2017

1 reference

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Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis

19 March 2017

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Direct analysis of nematode cis- and trans-spliceosomes: a functional role for U5 snRNA in spliced leader addition trans-splicing and the identification of novel Sm snRNPs.

19 March 2017

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Caenorhabditis elegans embryos contain only one major species of Ro RNP

19 March 2017

1 reference

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19 March 2017

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Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme

19 March 2017

1 reference

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Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment

19 March 2017

1 reference

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Systematic functional analysis of the Caenorhabditis elegans genome using RNAi

19 March 2017

1 reference

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Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

19 March 2017

1 reference

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Rrp8p is a yeast nucleolar protein functionally linked to Gar1p and involved in pre-rRNA cleavage at site A2.

19 March 2017

1 reference

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Synthesis and assembly of the box C+D small nucleolar RNPs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA.

19 March 2017

1 reference

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S-Adenosylmethionine-dependent methylation in Saccharomyces cerevisiae. Identification of a novel protein arginine methyltransferase

19 March 2017

1 reference

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Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure.

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Nop5p is a small nucleolar ribonucleoprotein component required for pre-18 S rRNA processing in yeast

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases

19 March 2017

1 reference

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Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs

19 March 2017

1 reference

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A yeast nucleolar protein related to mammalian fibrillarin is associated with small nucleolar RNA and is essential for viability

19 March 2017

1 reference

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Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

19 March 2017

1 reference

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The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation

19 March 2017

1 reference

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Operons as a common form of chromosomal organization in C. elegans

19 March 2017

1 reference

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Disassembly and reconstitution of signal recognition particle

19 March 2017

1 reference

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Evolution of small nucleolar RNAs in nematodes

19 March 2017

1 reference

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Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library

19 March 2017

1 reference

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TM4: a free, open-source system for microarray data management and analysis

19 March 2017

1 reference

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Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Specific interference by ingested dsRNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Function and synthesis of small nucleolar RNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

C. elegans noncoding RNA genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Ro's role in RNA reconnaissance

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

PHAX and CRM1 are required sequentially to transport U3 snoRNA to nucleoli

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

RNomics: identification and function of small, non-messenger RNAs

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Use of cDNA subtraction and RNA interference screens in combination reveals genes required for germ-line development in Caenorhabditis elegans

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

The signal recognition particle

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

The levels of the RoRNP-associated Y RNA are dependent upon the presence of ROP-1, the Caenorhabditis elegans Ro60 protein

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

G proteins are required for spatial orientation of early cell cleavages in C. elegans embryos.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Signal recognition particle (SRP), a ubiquitous initiator of protein translocation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

A spliced leader is present on a subset of mRNAs from the human parasite Schistosoma mansoni

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Human Y5 RNA specializes a Ro ribonucleoprotein for 5S ribosomal RNA quality control.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Dyskerin expression influences the level of ribosomal RNA pseudo-uridylation and telomerase RNA component in human breast cancer.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Regulation of polymerase II transcription by 7SK snRNA: two distinct RNA elements direct P-TEFb and HEXIM1 binding

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Guiding ribose methylation of rRNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Isolation of eight novel Caenorhabditis elegans small RNAs

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Dyskeratosis congenita and cancer in mice deficient in ribosomal RNA modification

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

Loss of the putative RNA-directed RNA polymerase RRF-3 makes C. elegans hypersensitive to RNAi

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442092

29 November 2018

Identifiers

DOI

10.1186/1471-2164-9-278

1 reference

22 June 2017

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-278

1 reference

9 September 2019

PMC publication ID

2442092

0 references

1 reference