(Q21560900)

14 September 2022

31

Tim Hubbard

Tim

Hubbard

1 reference

14 September 2022

35

Alexandre Reymond

Alexandre

Reymond

1 reference

14 September 2022

9

Catherine Ucla

Catherine

Ucla

1 reference

14 September 2022

3

Philipp Kapranov

Philipp

Kapranov

1 reference

14 September 2022

30

Jennifer Harrow

Jennifer

Harrow

1 reference

14 September 2022

33

Adam Frankish

Adam

Frankish

1 reference

14 September 2022

19

Jorg Drenkow

Jorg

Drenkow

1 reference

14 September 2022

10

Jacqueline Chrast

Jacqueline

Chrast

1 reference

14 September 2022

Roderic Guigó i Serra

37

Roderic Guigó

Roderic

Guigó

1 reference

14 September 2022

7

Cédric Howald

Cédric

Howald

1 reference

14 September 2022

Jonathan M Mudge

6

Jonathan M

Mudge

1 reference

14 September 2022

Sylvain Foissac

8

Sylvain

Foissac

1 reference

14 September 2022

Julien Lagarde

2

Julien

Lagarde

1 reference

14 September 2022

Sarah Djebali

1

Sarah

Djebali

1 reference

14 September 2022

Kourosh Salehi-Ashtiani

object named as

Kourosh Salehi-Ashtiani

34

Kourosh

Salehi-Ashtiani

1 reference

14 September 2022

Josep Lluís Gelpí

21

Josep Lluís

Gelpí

1 reference

14 September 2022

Thomas R Gingeras

38

Thomas R

Gingeras

1 reference

14 September 2022

Stilianos Antonarakis

object named as

Stylianos E Antonarakis

36

Stylianos E

Antonarakis

1 reference

14 September 2022

Philippe Batut

28

Philippe

Batut

1 reference

14 September 2022

John Stamatoyannopoulos

27

object named as

John Stamatoyannopoulos

John

Stamatoyannopoulos

1 reference

14 September 2022

5

Christelle Borel

Christelle

Borel

1 reference

14 September 2022

26

Marc Vidal

Marc

Vidal

1 reference

14 September 2022

32

Job Dekker

Job

Dekker

1 reference

14 September 2022

20

Michael L

Tress

Michael L Tress

1 reference

14 September 2022

18

Erica

Dumais

Erica Dumais

1 reference

14 September 2022

13

Ryan R

Murray

Ryan R Murray

1 reference

14 September 2022

11

Paolo

Ribeca

Paolo Ribeca

1 reference

14 September 2022

15

Lila

Ghamsari

Lila Ghamsari

1 reference

14 September 2022

25

Bryan R

Lajoie

Bryan R Lajoie

1 reference

14 September 2022

29

Alex

Dobin

Alex Dobin

1 reference

14 September 2022

22

Modesto

Orozco

Modesto Orozco

1 reference

14 September 2022

Vincent Lacroix

4

Vincent

Lacroix

1 reference

14 September 2022

David Martin

12

David

Martin

1 reference

14 September 2022

Xinping Yang

14

Xinping

Yang

1 reference

14 September 2022

Chenwei Lin

16

Chenwei

Lin

1 reference

14 September 2022

Ian Bell

17

Ian

Bell

1 reference

14 September 2022

Nynke L van Berkum

24

Nynke L

van Berkum

1 reference

Creative Commons Attribution 4.0 International

14 September 2022

language of work or name

English

0 references

publication date

2012

0 references

published in

PLOS One

0 references

volume

7

0 references

issue

1

0 references

page(s)

e28213

0 references

copyright license

start time

4 January 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Apparent non-canonical trans-splicing is generated by reverse transcriptase in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

A large genome center's improvements to the Illumina sequencing system

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Tentative mapping of transcription-induced interchromosomal interaction using chimeric EST and mRNA data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

GENCODE: producing a reference annotation for ENCODE

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Tandem chimerism as a means to increase protein complexity in the human genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Transcription-mediated gene fusion in the human genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

The otter annotation system

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Reevaluating human gene annotation: a second-generation analysis of chromosome 22

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

BLAT—The BLAST-Like Alignment Tool

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Basic local alignment search tool

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Primer3 on the WWW for general users and for biologist programmers

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Consed: a graphical tool for sequence finishing

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Circos: an information aesthetic for comparative genomics

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Origins, evolution, and phenotypic impact of new genes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Global analysis of trans-splicing in Drosophila.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

12 September 2017

Direct RNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Implications of chimaeric non-co-linear transcripts

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Chimeric transcript discovery by paired-end transcriptome sequencing

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Progress in the detection of human genome structural variations

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Efficient targeted transcript discovery via array-based normalization of RACE libraries

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

When good transcripts go bad: artifactual RT-PCR 'splicing' and genome analysis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

The vertebrate genome annotation (Vega) database

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

RNase protection assay for quantifying gene expression levels

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Reverse transcriptase template switching and false alternative transcripts.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Relative rates of retroviral reverse transcriptase template switching during RNA- and DNA-dependent DNA synthesis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

The localization of sites containing nascent RNA and splicing factors.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Retrovirus variation and reverse transcription: abnormal strand transfers result in retrovirus genetic variation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Visualization of focal sites of transcription within human nuclei.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

Short homologous sequences are strongly associated with the generation of chimeric RNAs in eukaryotes.

27 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0028213

GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0028213

Integrated graphical analysis of protein sequence features predicted from sequence composition.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0028213

21 January 2018

Ribonuclease protection.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251577

A detailed model of reverse transcription and tests of crucial aspects

29 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/22238572

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

How scale-free are biological networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/22238572

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0028213

1 reference

ADS bibcode

2012PLoSO...728213D

0 references

1 reference

1 reference

1 reference