(Q21562483)

English

Survival in nuclear waste, extreme resistance, and potential applications gleaned from the genome sequence of Kineococcus radiotolerans SRS30216

scientific article

Survival in Nuclear Waste, Extreme Resistance, and Potential Applications Gleaned from the Genome Sequence of Kineococcus radiotolerans SRS30216

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scholarly article

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Survival in nuclear waste, extreme resistance, and potential applications gleaned from the genome sequence of Kineococcus radiotolerans SRS30216 (English)

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Timothy R. Hoover

object named as

Timothy R Hoover

6

author given names

Timothy R

author last names

Hoover

1 reference

17 September 2022

object named as

Cliff S Han

8

author given names

Cliff S

author last names

Han

1 reference

17 September 2022

author name string

Christopher E Bagwell

1

author given names

Christopher E

author last names

Bagwell

1 reference

17 September 2022

Swapna Bhat

2

author given names

Swapna

author last names

Bhat

1 reference

17 September 2022

Gary M Hawkins

3

author given names

Gary M

author last names

Hawkins

1 reference

17 September 2022

Bryan W Smith

4

author given names

Bryan W

author last names

Smith

1 reference

17 September 2022

Tapan Biswas

5

author given names

Tapan

author last names

Biswas

1 reference

17 September 2022

Elizabeth Saunders

7

author given names

Elizabeth

author last names

Saunders

1 reference

17 September 2022

Oleg V Tsodikov

9

author given names

Oleg V

author last names

Tsodikov

1 reference

17 September 2022

Lawrence J Shimkets

10

author given names

Lawrence J

author last names

Shimkets

1 reference

17 September 2022

language of work or name

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publication date

2008

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3

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12

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e3878

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copyright license

Creative Commons CC0 License

5 December 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

Protein oxidation implicated as the primary determinant of bacterial radioresistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the hanford site, washington state

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

The complete genome sequence of Escherichia coli K-12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

Identification and functional analysis of a phytoene desaturase gene from the extremely radioresistant bacterium Deinococcus radiodurans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

CsrB sRNA family: sequestration of RNA-binding regulatory proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

Reassembly of shattered chromosomes in Deinococcus radiodurans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

Mycobacterial Ku and ligase proteins constitute a two-component NHEJ repair machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

PprA: a novel protein from Deinococcus radiodurans that stimulates DNA ligation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

Identification of a DNA nonhomologous end-joining complex in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

Initiation of genetic recombination and recombination-dependent replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

19 March 2017

Riboswitches in eubacteria sense the second messenger cyclic di-GMP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

7 April 2017

Asymmetric substitution patterns in the two DNA strands of bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

7 April 2017

Basal DNA repair machinery is subject to positive selection in ionizing-radiation-resistant bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Protein oxidation: key to bacterial desiccation resistance?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Intracellular copper accumulation enhances the growth of Kineococcus radiotolerans during chronic irradiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Additive effects of SbcCD and PolX deficiencies in the in vivo repair of DNA double-strand breaks in Deinococcus radiodurans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

MiST: a microbial signal transduction database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Soil to genomics: the Streptomyces chromosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Defenses against oxidative stress in Neisseria gonorrhoeae: a system tailored for a challenging environment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Kineococcus marinus sp. nov., isolated from marine sediment of the coast of Jeju, Korea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Cell cycle control by oscillating regulatory proteins in Caulobacter crescentus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Regulation of flagella

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Deinococcus radiodurans - the consummate survivor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Bioremediation of radioactive waste: radionuclide-microbe interactions in laboratory and field-scale studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Bacterial flagellar diversity in the post-genomic era.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Circular genome visualization and exploration using CGView

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Positive control of swarming, rhamnolipid synthesis, and lipase production by the posttranscriptional RsmA/RsmZ system in Pseudomonas aeruginosa PAO1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Cell cycle timing and developmental checkpoints in Caulobacter crescentus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Spatial and temporal control of differentiation and cell cycle progression in Caulobacter crescentus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Global regulation by CsrA in Salmonella typhimurium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Kineococcus radiotolerans sp. nov., a radiation-resistant, gram-positive bacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Regulation of flagellar assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Positive regulation of motility and flhDC expression by the RNA-binding protein CsrA of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Anti-sigma factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Description of four new species of the genus Kineosporia: Kineosporia succinea sp. nov., Kineosporia rhizophila sp. nov., Kineosporia mikuniensis sp. nov. and Kineosporia rhamnosa sp. nov., isolated from plant samples, and amended description of the

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

12 September 2017

Effect of a recD mutation on DNA damage resistance and transformation in Deinococcus radiodurans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

30 May 2018

Cell cycle-dependent polar localization of an essential bacterial histidine kinase that controls DNA replication and cell division

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

30 May 2018

The effect of radiation on microbiologic characteristics of M tuberculosis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

30 May 2018

Telomere resolution by Borrelia burgdorferi ResT through the collaborative efforts of tethered DNA binding domains.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003878

21 January 2018

DoriC: a database of oriC regions in bacterial genomes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003878

21 January 2018

Accumulation of Mn(II) in Deinococcus radiodurans facilitates gamma-radiation resistance.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003878

21 January 2018

Restoration of the DNA damage resistance of Deinococcus radiodurans DNA polymerase mutants by Escherichia coli DNA polymerase I and Klenow fragment.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003878

21 January 2018

The DNA excision repair system of the highly radioresistant bacterium Deinococcus radiodurans is facilitated by the pentose phosphate pathway

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003878

21 January 2018

Members of the genus Arthrobacter grow anaerobically using nitrate ammonification and fermentative processes: anaerobic adaptation of aerobic bacteria abundant in soil

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003878

21 January 2018

Microbial dimethylsulfoxide and trimethylamine-N-oxide respiration.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003878

21 January 2018

Kineococcus aurantiacus gen. nov., sp. nov., a New Aerobic, Gram-Positive, Motile Coccus with meso-Diaminopimelic Acid and Arabinogalactan in the Cell Wall

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003878

21 January 2018

Motility Responses and Desiccation Survival of Zoospores from the Actinomycete Kineosporia sp. Strain SR11.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003878

21 January 2018

CsrA of Bacillus subtilis regulates translation initiation of the gene encoding the flagellin protein (hag) by blocking ribosome binding.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003878

21 January 2018

Three tandem HRDC domains have synergistic effect on the RecQ functions in Deinococcus radiodurans.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003878

21 January 2018

Radiation Resistance: Resurrection by Recombination

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003878

21 January 2018

Knockout of crtB or crtI gene blocks the carotenoid biosynthetic pathway in Deinococcus radiodurans R1 and influences its resistance to oxidative DNA-damaging agents due to change of free radicals scavenging ability.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587704

29 November 2018

Evaluation of the antioxidant effects of carotenoids from Deinococcus radiodurans through targeted mutagenesis, chemiluminescence, and DNA damage analyses

1 reference

https://pubmed.ncbi.nlm.nih.gov/19057647

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Global regulation by the small RNA-binding protein CsrA and the non-coding RNA molecule CsrB

1 reference

https://pubmed.ncbi.nlm.nih.gov/19057647

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Involvement of an X family DNA polymerase in double-stranded break repair in the radioresistant organism Deinococcus radiodurans

1 reference

https://pubmed.ncbi.nlm.nih.gov/19057647

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0003878

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2008PLoSO...3.3878B

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