(Q22065291)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

title

Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

main subject

whole genome duplication

1 reference

based on heuristic

inferred from title

whole genome sequencing

1 reference

3

Jia-Xing Yue

Jia-Xing

Yue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

4

Jie Lv

Jie

Lv

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

7

Nicholas H Putnam

Nicholas H

Putnam

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

Carlos W Nossa

1

Carlos W

Nossa

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

Paul Havlak

series ordinal

2

author given names

Paul

author last names

Havlak

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

Kimberly Y Vincent

series ordinal

5

author given names

Kimberly Y

author last names

Vincent

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

H Jane Brockmann

series ordinal

6

author given names

H Jane

author last names

Brockmann

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

language of work or name

English

0 references

publication date

14 May 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

volume

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

issue

1

0 references

page(s)

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1186/2047-217x-3-9

21 March 2020

exact match

0 references

cites work

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The Amphimedon queenslandica genome and the evolution of animal complexity

19 March 2017

1 reference

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The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

19 March 2017

1 reference

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The Trichoplax genome and the nature of placozoans

19 March 2017

1 reference

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The amphioxus genome and the evolution of the chordate karyotype

19 March 2017

1 reference

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Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

19 March 2017

1 reference

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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Automated generation of heuristics for biological sequence comparison

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

MUSCLE: multiple sequence alignment with high accuracy and high throughput

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

The hidden duplication past of Arabidopsis thaliana

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Extensive genomic duplication during early chordate evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

The Sequence Alignment/Map format and SAMtools

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

MrBayes 3: Bayesian phylogenetic inference under mixed models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Consed: a graphical tool for sequence finishing

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Base-calling of automated sequencer traces using phred. II. Error probabilities

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Rapid SNP discovery and genetic mapping using sequenced RAD markers

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

KaKs_Calculator: calculating Ka and Ks through model selection and model averaging

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Constraints on genes shape long-term conservation of macro-synteny in metazoan genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Meraculous: de novo genome assembly with short paired-end reads

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

A high-resolution recombination map of the human genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Molecular evidence for an ancient duplication of the entire yeast genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

7 April 2017

1 reference

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Comprehensive human genetic maps: individual and sex-specific variation in recombination

7 April 2017

1 reference

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Exploiting sparseness in de novo genome assembly

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

A family-based probabilistic method for capturing de novo mutations from high-throughput short-read sequencing data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Molecular phylogeny of extant horseshoe crabs (Xiphosura, Limulidae) indicates Paleogene diversification of Asian species

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Assemblathon 1: a competitive assessment of de novo short read assembly methods

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Next generation sequence assembly with AMOS.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Multiplexed shotgun genotyping for rapid and efficient genetic mapping

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

mlRho - a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

High-throughput genotyping by whole-genome resequencing.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Fast and flexible simulation of DNA sequence data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

ALLPATHS: de novo assembly of whole-genome shotgun microreads

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Extreme genomic variation in a natural population

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

An evolutionary view of human recombination

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Construction of a 10,000-marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and a genomewide physical map.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

The Atlas genome assembly system

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Hierarchical scaffolding with Bambus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Single nucleotide polymorphisms and recombination rate in humans

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Regions of lower crossing over harbor more rare variants in African populations of Drosophila melanogaster.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

An SNP map of the human genome generated by reduced representation shotgun sequencing

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

DNA polymorphism in lycopersicon and crossing-over per physical length

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Statistical properties of a DNA sample under the finite-sites model

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

DNA methylation and the frequency of CpG in animal DNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

12 September 2017

The phusion assembler

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066314

Horseshoe Crabs – An Ancient Ancestry Revealed

30 May 2018

1 reference

https://api.crossref.org/works/10.1186%2F2047-217X-3-9

A Neutral Explanation for the Correlation of Diversity with Recombination Rates in Humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F2047-217X-3-9

Inference of genome duplications from age distributions revisited.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F2047-217X-3-9

Selection at linked sites in the partial selfer Caenorhabditis elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F2047-217X-3-9

The relationship of nucleotide polymorphism, recombination rate and selection in wild tomato species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F2047-217X-3-9

Reducing storage requirements for biological sequence comparison.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F2047-217X-3-9

The origins of eukaryotic gene structure

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24987520

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/2047-217X-3-9

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

Dimensions Publication ID

1053283849

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24987520%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

2 references