(Q22066016)

English

The Complete Chloroplast Genome Sequence of Pelargonium x hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants

scientific article

The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants

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scholarly article

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The Complete Chloroplast Genome Sequence of Pelargonium x hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants (English)

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Robert K. Jansen

author given names

Robert K

author last names

Jansen

7

object named as

Robert K Jansen

1 reference

7 February 2023

author name string

T. W. Chumley

1

author given names

Timothy W

author last names

Chumley

1 reference

7 February 2023

Jeffrey D Palmer

author given names

Jeffrey D

author last names

Palmer

2

1 reference

7 February 2023

Jeffrey P Mower

author given names

Jeffrey P

author last names

Mower

3

1 reference

7 February 2023

H Matthew Fourcade

author given names

H Matthew

author last names

Fourcade

4

1 reference

7 February 2023

Patrick J Calie

author given names

Patrick J

author last names

Calie

5

1 reference

7 February 2023

Jeffrey L Boore

author given names

Jeffrey L

author last names

Boore

6

1 reference

7 February 2023

language of work or name

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publication date

10 August 2006

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Molecular Biology and Evolution

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23

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2175-2190

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11

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes

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Structure and evolution of the largest chloroplast gene (ORF2280): internal plasticity and multiple gene loss during angiosperm evolution.

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Chloroplast DNA inversions and the origin of the grass family (Poaceae)

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The distribution and phylogenetic significance of a 50-kb chloroplast DNA inversion in the flowering plant family Leguminosae

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Group I introns as mobile genetic elements: facts and mechanistic speculations--a review

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Two copies of a DNA element, 'Wendy', in the chloroplast chromosome of Chlamydomonas reinhardtii between rearranged gene clusters

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Occurrence of plastid RNA editing in all major lineages of land plants

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Phylogenetic Significance of the rpoA Loss in the Chloroplast Genome of Mosses

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Consed: a graphical tool for sequence finishing

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The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals

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Structural rearrangements, including parallel inversions, within the chloroplast genome of Anemone and related genera

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Common features of three inversions in wheat chloroplast DNA.

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A chloroplast DNA inversion marks an ancient evolutionary split in the sunflower family (Asteraceae)

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Two chloroplast DNA inversions originated simultaneously during the early evolution of the sunflower family (Asteraceae).

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Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular Plants

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21 January 2018

RNA editing in hornwort chloroplasts makes more than half the genes functional

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MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

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REPuter: the manifold applications of repeat analysis on a genomic scale

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REPuter: fast computation of maximal repeats in complete genomes.

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Evolutionary Significance of the Loss of the Chloroplast-DNA Inverted Repeat in the Leguminosae Subfamily Papilionoideae

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21 January 2018

Many Parallel Losses of infA from Chloroplast DNA during Angiosperm Evolution with Multiple Independent Transfers to the Nucleus

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Sensitivity to Alternaria alternata toxin in citrus because of altered mitochondrial RNA processing

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Contrasting modes and tempos of genome evolution in land plant organelles

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Unusual structure of geranium chloroplast DNA: A triple-sized inverted repeat, extensive gene duplications, multiple inversions, and two repeat families

1 reference

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21 January 2018

Rearrangements in the chloroplast genomes of mung bean and pea

1 reference

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21 January 2018

Evolutionary re-organisation of a large operon in adzuki bean chloroplast DNA caused by inverted repeat movement.

1 reference

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21 January 2018

Phylogenetic Relationships of the Geraniaceae and Geraniales from rbcL Sequence Comparisons

1 reference

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21 January 2018

The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization

1 reference

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The Plastid Chromosome of Atropa belladonna and its Comparison with that of Nicotiana tabacum: The Role of RNA Editing in Generating Divergence in the Process of Plant Speciation

1 reference

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21 January 2018

RNA editing in the cytochrome b locus of the higher plant Oenothera berteriana includes a U-to-C transition

1 reference

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MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences

1 reference

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Identification and comparative analysis of the chloroplast alpha-subunit gene of DNA-dependent RNA polymerase from seven Euglena species

1 reference

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Chloroplast genomes of two conifers lack a large inverted repeat and are extensively rearranged

1 reference

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Complete Nucleotide Sequence of the Chloroplast Genome from the Tasmanian Blue Gum, Eucalyptus globulus (Myrtaceae)

1 reference

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21 January 2018

Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus

1 reference

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21 January 2018

Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii

1 reference

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High levels of RNA editing in a vascular plant chloroplast genome: analysis of transcripts from the fern Adiantum capillus-veneris.

1 reference

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21 January 2018

Complete Nucleotide Sequence of the Chloroplast Genome from a Leptosporangiate Fern, Adiantum capillus-veneris L

1 reference

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21 January 2018

Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant

1 reference

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21 January 2018

A fragment of chloroplast DNA was transferred horizontally, probably from non-eudicots, to mitochondrial genome of Phaseolus.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL089

21 January 2018

Automatic annotation of organellar genomes with DOGMA

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL089

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Extensive RNA editing of U to C in addition to C to U substitution in the rbcL transcripts of hornwort chloroplasts and the origin of RNA editing in green plants

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL089

21 January 2018

The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.

1 reference

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7 January 2021

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inferred from DOI database lookup

The mechanism of the mixed inheritance of chloroplast genes in Pelargonium : Evidence from gene frequency distributions among the progeny of crosses

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

The chloroplast genomes of conifers lack one of the rRNA-encoding inverted repeats

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL089

7 January 2021

based on heuristic

inferred from DOI database lookup

Pseudogenes and short repeated sequences in the rice chloroplast genome

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL089

7 January 2021

based on heuristic

inferred from DOI database lookup

Characterization and phylogenetic distribution of a chloroplast DNA rearrangement in theBerberidaceae

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL089

7 January 2021

based on heuristic

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The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Plastid transcription in the holoparasitic plant genus Cuscuta: parallel loss of the rrn16 PEP-promoter and of the rpoA and rpoB genes coding for the plastid-encoded RNA polymerase.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL089

7 January 2021

based on heuristic

inferred from DOI database lookup

Targeted deletion of sprA from the tobacco plastid genome indicates that the encoded small RNA is not essential for pre-16S rRNA maturation in plastids

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL089

7 January 2021

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A Chloroplast DNA Inversion as a Subtribal Character in the Phaseoleae (Leguminosae)

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL089

7 January 2021

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Expansion and Contraction of the Chloroplast Inverted Repeat in Apiaceae Subfamily Apioideae

1 reference

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