(Q22066371)

5 July 2017

title

The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens (English)

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5 July 2017

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Methanopyrus kandleri

object named as

Methanopyrus kandleri

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inferred from title

whole genome sequencing

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15

Eugene V Koonin

Eugene V

Koonin

1 reference

5 July 2017

8

L Aravind

L

Aravind

1 reference

7 February 2023

Sergei A Kozyavkin

16

Sergei A

Kozyavkin

1 reference

7 February 2023

Igor B Rogozin

10

Igor B

Rogozin

1 reference

7 February 2023

12

Yuri I Wolf

Yuri I

Wolf

1 reference

5 July 2017

3

Kira S Makarova

Kira S

Makarova

1 reference

5 July 2017

9

Darren A Natale

Darren A

Natale

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5 July 2017

11

Roman L Tatusov

Roman L

Tatusov

1 reference

5 July 2017

Alexei I Slesarev

1

Alexei I

Slesarev

1 reference

5 July 2017

Katja V Mezhevaya

2

Katja V

Mezhevaya

1 reference

5 July 2017

Nikolai N Polushin

4

Nikolai N

Polushin

1 reference

5 July 2017

Olga V Shcherbinina

5

Olga V

Shcherbinina

1 reference

5 July 2017

Vera V Shakhova

6

Vera V

Shakhova

1 reference

5 July 2017

Galina I Belova

7

Galina I

Belova

1 reference

5 July 2017

Karl O Stetter

13

Karl O

Stetter

1 reference

5 July 2017

Andrei G Malykh

14

Andrei G

Malykh

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5 July 2017

language of work or name

English

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publication date

1 April 2002

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Proceedings of the National Academy of Sciences of the United States of America

5 July 2017

published in

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5 July 2017

volume

99

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5 July 2017

issue

7

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5 July 2017

page(s)

4644-4649

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Quod erat demonstrandum? The mystery of experimental validation of apparently erroneous computational analyses of protein sequences

5 July 2017

cites work

1 reference

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Genome trees constructed using five different approaches suggest new major bacterial clades

19 March 2017

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Automated finishing with autofinish

19 March 2017

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Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics

19 March 2017

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Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach

19 March 2017

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19 March 2017

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Bioenergetics of the Archaea

19 March 2017

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19 March 2017

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19 March 2017

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The winds of (evolutionary) change: breathing new life into microbiology

19 March 2017

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Before enzymes and templates: theory of surface metabolism

19 March 2017

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T-Coffee: A novel method for fast and accurate multiple sequence alignment

19 March 2017

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The PSIPRED protein structure prediction server

19 March 2017

1 reference

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Consed: a graphical tool for sequence finishing

19 March 2017

1 reference

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Base-calling of automated sequencer traces using phred. II. Error probabilities

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

A genomic perspective on protein families

19 March 2017

1 reference

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Horizontal gene transfer in prokaryotes: quantification and classification

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

Genome phylogeny based on gene content

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

A type IB topoisomerase with DNA repair activities

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

Lineage-specific gene expansions in bacterial and archaeal genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

The precursor strategy: terminus methoxyoxalamido modifiers for single and multiple functionalization of oligodeoxyribonucleotides

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

Stress genes and proteins in the archaea

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

Evidence for an early prokaryotic origin of histones H2A and H4 prior to the emergence of eukaryotes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

A two-subunit type I DNA topoisomerase (reverse gyrase) from an extreme hyperthermophile.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

The use of modified primers to eliminate cycle sequencing artifacts

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

New dye-labeled terminators for improved DNA sequencing patterns

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

Methanobacterium thermoautotrophicum encodes two multisubunit membrane-bound [NiFe] hydrogenases. Transcription of the operons and sequence analysis of the deduced proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

Protein-coding regions prediction combining similarity searches and conservative evolutionary properties of protein-coding sequences

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

Identifying potential tRNA genes in genomic DNA sequences

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

Salt dependence, kinetic properties and catalytic mechanism of N-formylmethanofuran:tetrahydromethanopterin formyltransferase from the extreme thermophile Methanopyrus kandleri

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

Methanopyrus kandleri, gen. and sp. nov. represents a novel group of hyperthermophilic methanogens, growing at 110�C

30 May 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032671499

DNA topoisomerase V is a relative of eukaryotic topoisomerase I from a hyperthermophilic prokaryote

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032671499

In vitro selection of kinase and ligase deoxyribozymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032671499

The Phylogeny of Methanopyrus kandleri

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032671499

NOTES: Phylogeny of Methanopyrus kandleri Based on Methyl Coenzyme M Reductase Operons

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032671499

Evolution of prokaryotic gene order: genome rearrangements in closely related species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032671499

Methanococcus jannaschii prolyl-cysteinyl-tRNA synthetase possesses overlapping amino acid binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032671499

An aminoacyl tRNA synthetase whose sequence fits into neither of the two known classes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032671499

Non-orthologous gene displacement

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032671499

A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.032671499

2'-modified oligonucleotides from methoxyoxalamido and succinimido precursors: synthesis, properties, and applications.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

Purification and characterization of DNA topoisomerase V. An enzyme from the hyperthermophilic prokaryote Methanopyrus kandleri that resembles eukaryotic topoisomerase I.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123701

Gene order is not conserved in bacterial evolution

29 November 2018

1 reference

12 December 2020

Non-orthologous gene displacement

1 reference

12 December 2020

Activation and thermostabilization effects of cyclic 2, 3-diphosphoglycerate on enzymes from the hyperthermophilic Methanopyrus kandleri

1 reference

12 December 2020

A reverse gyrase with an unusual structure. A type I DNA topoisomerase from the hyperthermophile Methanopyrus kandleri is a two-subunit protein

1 reference

12 December 2020

Methanopyrus kandleri: an archaeal methanogen unrelated to all other known methanogens

1 reference

12 December 2020

Topoisomerase V from Methanopyrus kandleri

1 reference

12 December 2020

On the maximum likelihood method in molecular phylogenetics

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.032671499

1 reference

5 July 2017

0 references

1 reference

5 July 2017

1 reference