(Q23047571)

26 June 2017

title

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis. (English)

1 reference

26 June 2017

0 references

0 references

1 reference

16

Charles Y Chiu

Charles Y

Chiu

1 reference

Jean-Jacques Muyembe-Tamfum

26 June 2017

14

object named as

Jean-Jacques Muyembe-Tamfum

Jean-Jacques

Muyembe-Tamfum

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26 June 2017

Jerome Bouquet

8

Jerome

Bouquet

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PubMed

7 February 2023

15

Susan L Stramer

Susan L

Stramer

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26 June 2017

12

Prime Mulembakani

Prime

Mulembakani

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26 June 2017

13

Bradley S Schneider

Bradley S

Schneider

1 reference

26 June 2017

Alexander L. Greninger

1

object named as

Alexander L Greninger

Alexander L

Greninger

1 reference

26 June 2017

4

Guixia

Yu

Guixia Yu

1 reference

26 June 2017

Samia N Naccache

2

Samia N

Naccache

1 reference

26 June 2017

Scot Federman

3

Scot

Federman

1 reference

26 June 2017

Placide Mbala

5

Placide

Mbala

1 reference

26 June 2017

Doug Stryke

7

Doug

Stryke

1 reference

26 June 2017

Jeffrey M Linnen

10

Jeffrey M

Linnen

1 reference

26 June 2017

Roger Dodd

11

Roger

Dodd

1 reference

26 June 2017

Vanessa Bres

6

Vanessa

Bres

1 reference

26 June 2017

Sneha Somasekar

9

Sneha

Somasekar

1 reference

26 June 2017

language of work or name

English

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publication date

29 September 2015

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26 June 2017

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26 June 2017

volume

7

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26 June 2017

issue

1

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page(s)

99

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Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

26 June 2017

said to be the same as

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cites work

Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella

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19 March 2017

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Metagenomics for pathogen detection in public health

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

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19 March 2017

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19 March 2017

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Emergence of Zaire Ebola Virus Disease in Guinea

19 March 2017

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

19 March 2017

1 reference

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The Sequence Alignment/Map format and SAMtools

19 March 2017

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19 March 2017

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19 March 2017

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A metagenomic analysis of pandemic influenza A (2009 H1N1) infection in patients from North America

19 March 2017

1 reference

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19 March 2017

1 reference

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Shifting the genomic gold standard for the prokaryotic species definition

7 April 2017

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Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome

7 April 2017

1 reference

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Genomic Assays for Identification of Chikungunya Virus in Blood Donors, Puerto Rico, 2014.

27 September 2017

1 reference

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A complete bacterial genome assembled de novo using only nanopore sequencing data

27 September 2017

1 reference

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Successful test launch for nanopore sequencing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer

27 September 2017

1 reference

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Improved data analysis for the MinION nanopore sequencer

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

Clinical detection and characterization of bacterial pathogens in the genomics era.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

Astrovirus VA1/HMO-C: an increasingly recognized neurotropic pathogen in immunocompromised patients

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

Diagnosis of neuroinvasive astrovirus infection in an immunocompromised adult with encephalitis by unbiased next-generation sequencing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer.

27 September 2017

1 reference

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Ebola virus disease in the Democratic Republic of Congo

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

Actionable diagnosis of neuroleptospirosis by next-generation sequencing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

Diagnostic metagenomics: potential applications to bacterial, viral and parasitic infections

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

27 September 2017

Viral pathogen discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

Using a pan-viral microarray assay (Virochip) to screen clinical samples for viral pathogens

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

Evaluation of the analytical performance of the Xpert MTB/RIF assay.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

Comprehensive panel of real-time TaqMan polymerase chain reaction assays for detection and absolute quantification of filoviruses, arenaviruses, and New World hantaviruses.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

Parameters for accurate genome alignment

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

A bioinformatician's guide to metagenomics

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

A new arenavirus in a cluster of fatal transplant-associated diseases

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012-14): a retrospective cohort study.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4587849

10.1186/S13073-015-0220-9

30 May 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

26 June 2017

1053481392

0 references

OpenCitations bibliographic resource ID

806008

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

806008

1 reference