(Q24286948)

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Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests

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Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests (English)

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1 reference

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Akaike information criterion

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based on heuristic

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Thomas R. Buckley

2

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1

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publication date

October 2004

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Systematic Biology

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53

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5

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793-808

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A new look at the statistical model identification

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Effects of Models of Rate Evolution on Estimation of Divergence Dates with Special Reference to the Metazoan 18S Ribosomal RNA Phylogeny

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Bayesian model adequacy and choice in phylogenetics.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Science and Statistics

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Cross-Validation Methods

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Topological bias and inconsistency of maximum likelihood using wrong models.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Model misspecification and probabilistic tests of topology: evidence from empirical data sets

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Combined data, Bayesian phylogenetics, and the origin of the New Zealand cicada genera

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Evolutionary trees from DNA sequences: A maximum likelihood approach

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Counterexamples to parsimony and BIC

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Key Concepts in Model Selection: Performance and Generalizability.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

A graph theoretic approach to the development of minimal phylogenetic trees

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Evolution of the mitochondrial cytochrome oxidase II gene in collembola

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Statistical tests of models of DNA substitution.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Phylogenetic information and experimental design in molecular systematics.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Reversible jump Markov chain Monte Carlo computation and Bayesian model determination

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Mitochondrial DNA evolution in primates: transition rate has been extremely low in the lemur.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Phylogeny and molecular evolution in primates

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Monte Carlo sampling methods using Markov chains and their applications

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

A sharper Bonferroni procedure for multiple tests of significance

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Phylogeny estimation: traditional and Bayesian approaches

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

PHYLOGENY ESTIMATION AND HYPOTHESIS TESTING USING MAXIMUM LIKELIHOOD

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Geographic origin of human mitochondrial DNA: accommodating phylogenetic uncertainty and model comparison

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Potential applications and pitfalls of Bayesian inference of phylogeny

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

A Bayesian framework for the analysis of cospeciation.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Bayesian inference of phylogeny and its impact on evolutionary biology

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Regression and time series model selection in small samples

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Model selection in ecology and evolution

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Different models, different trees: the geographic origin of PTLV-I.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Simplicity, Scientific Inference and Econometric Modelling

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Estimation of evolutionary distances between homologous nucleotide sequences

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

On Information and Sufficiency

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

A STATISTICAL PARADOX

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Bayesian phylogenetic inference via Markov chain Monte Carlo methods.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Equation of State Calculations by Fast Computing Machines

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Performance-based selection of likelihood models for phylogeny estimation

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Bayesian phylogenetic analysis of combined data

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

The effect of branch length variation on the selection of models of molecular evolution.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Using MODELTEST and PAUP* to select a model of nucleotide substitution

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

MODELTEST: testing the model of DNA substitution

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1).

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Selecting the Best-Fit Model of Nucleotide Substitution

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Simple (Wrong) Models for Complex Trees: A Case from Retroviridae

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Combining multiple data sets in a likelihood analysis: which models are the best?

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Tests of applicability of several substitution models for DNA sequence data

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Estimating the Dimension of a Model

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Lindley's Paradox

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Instrumentalism, Parsimony, and the Akaike Framework

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Testing the hypothesis of common ancestry.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Parsimony, likelihood, and the role of models in molecular phylogenetics.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Inferring confidence sets of possibly misspecified gene trees.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Hierarchical Phylogenetic Models for Analyzing Multipartite Sequence Data

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Bayesian selection of continuous-time Markov chain evolutionary models

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Testing a molecular clock without an outgroup: derivations of induced priors on branch-length restrictions in a Bayesian framework

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Further analysts of the data by akaike' s information criterion and the finite corrections

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Base compositional bias and phylogenetic analyses: a test of the "flying DNA" hypothesis

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Bayesian Model Selection and Model Averaging

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Among-site rate variation and its impact on phylogenetic analyses

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Maximum-Likelihood Models for Combined Analyses of Multiple Sequence Data

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Performance of likelihood ratio tests of evolutionary hypotheses under inadequate substitution models.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Estimation of evolutionary distances between nucleotide sequences.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

An Introduction to Model Selection.

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Statistical tests of gamma-distributed rate heterogeneity in models of sequence evolution in phylogenetics

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Experiences in elicitation [Read before The Royal Statistical Society at a meeting on 'Elicitation' on Wednesday, April 16th, 1997, the President, Professor A. F. M. Smith in the Chair]

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

21 January 2018

Bayesian Theory

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

7 January 2021

based on heuristic

inferred from DOI database lookup

Likelihood of a model and information criteria

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

7 January 2021

based on heuristic

inferred from DOI database lookup

Evolution of Protein Molecules

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

7 January 2021

based on heuristic

inferred from DOI database lookup

Out of India, thrice: diversification of Asian forest scorpions reveals three colonizations of Southeast Asia

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

7 January 2021

based on heuristic

inferred from DOI database lookup

Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

7 January 2021

based on heuristic

inferred from DOI database lookup

Likelihood Ratio Tests for Model Selection and Non-Nested Hypotheses

1 reference

https://api.crossref.org/works/10.1080%2F10635150490522304

7 January 2021

based on heuristic

inferred from DOI database lookup

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