(Q24292732)

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Recognition of RNA polymerase II and transcription bubbles by XPG, CSB, and TFIIH: insights for transcription-coupled repair and Cockayne Syndrome

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scholarly article

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Recognition of RNA polymerase II and transcription bubbles by XPG, CSB, and TFIIH: insights for transcription-coupled repair and Cockayne Syndrome (English)

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ERCC excision repair 5, endonuclease

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GOA release 2020-03-11

ERCC excision repair 6, chromatin remodeling factor

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GOA release 2020-03-11

protein C-terminus binding

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GOA release 2020-03-11

Cockayne syndrome

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based on heuristic

inferred from title

9

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Susan E Tsutakawa

object named as

Susan E Tsutakawa

2

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ORCID Public Data File 2021

author name string

Altaf H Sarker

1

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Seth Kostek

3

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Cliff Ng

4

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David S Shin

5

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Marian Peris

6

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Eric Campeau

7

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John A Tainer

8

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Priscilla K Cooper

10

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language of work or name

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publication date

28 October 2005

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20

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187-98

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2

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Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Overextended RNA:DNA hybrid as a negative regulator of RNA polymerase II processivity.

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

DNA repair-deficient diseases, xeroderma pigmentosum, Cockayne syndrome and trichothiodystrophy

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Severe growth retardation and short life span of double-mutant mice lacking Xpa and exon 15 of Xpg.

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Transcription-coupled repair and premature ageing

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Xeroderma pigmentosum and related disorders: defects in DNA repair and transcription

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Purification of human RNA polymerase II and general transcription factors

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Structure of the DNA repair and replication endonuclease and exonuclease FEN-1: coupling DNA and PCNA binding to FEN-1 activity

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Requirement of yeast RAD2, a homolog of human XPG gene, for efficient RNA polymerase II transcription. implications for Cockayne syndrome

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Effect of DNA lesions on transcription elongation

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Crucial role of the RNA:DNA hybrid in the processivity of transcription.

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Activation of p53 or loss of the Cockayne syndrome group B repair protein causes metaphase fragility of human U1, U2, and 5S genes

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

CSB is a component of RNA pol I transcription

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Transcriptional mutagenesis induced by uracil and 8-oxoguanine in Escherichia coli.

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Interactions involving the human RNA polymerase II transcription/nucleotide excision repair complex TFIIH, the nucleotide excision repair protein XPG, and Cockayne syndrome group B (CSB) protein

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Genome maintenance mechanisms for preventing cancer

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

A Rad26-Def1 complex coordinates repair and RNA pol II proteolysis in response to DNA damage

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Transcription - guarding the genome by sensing DNA damage

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Mechanisms of transcription-coupled DNA repair

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

The founding members of xeroderma pigmentosum group G produce XPG protein with severely impaired endonuclease activity

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Relationship of neurologic degeneration to genotype in three xeroderma pigmentosum group G patients.

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Translocation of Cockayne syndrome group A protein to the nuclear matrix: possible relevance to transcription-coupled DNA repair

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Transitions in the coupling of transcription and nucleotide excision repair within RNA polymerase II-transcribed genes of Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Cockayne syndrome group B protein enhances elongation by RNA polymerase II

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Retracted: A common mutational pattern in Cockayne syndrome patients from xeroderma pigmentosum group G: implications for a second XPG function

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Sequence-specific and domain-specific DNA repair in xeroderma pigmentosum and Cockayne syndrome cells

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Immunoaffinity purification of the human multisubunit transcription factor IIH

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Biochemical and biological characterization of wild-type and ATPase-deficient Cockayne syndrome B repair protein.

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

RNA polymerase II elongation complexes containing the Cockayne syndrome group B protein interact with a molecular complex containing the transcription factor IIH components xeroderma pigmentosum B and p62

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Structural characterization of RNA polymerase II complexes arrested by a cyclobutane pyrimidine dimer in the transcribed strand of template DNA.

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Conserved residues of human XPG protein important for nuclease activity and function in nucleotide excision repair

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Structural determinants for substrate binding and catalysis by the structure-specific endonuclease XPG

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Fate of RNA polymerase II stalled at a cisplatin lesion

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

The spacer region of XPG mediates recruitment to nucleotide excision repair complexes and determines substrate specificity

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

The Cockayne syndrome B protein, involved in transcription-coupled DNA repair, resides in an RNA polymerase II-containing complex

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Mechanism of open complex and dual incision formation by human nucleotide excision repair factors

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Open complex formation around a lesion during nucleotide excision repair provides a structure for cleavage by human XPG protein

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Deficient repair of the transcribed strand of active genes in Cockayne's syndrome cells

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Processing of branched DNA intermediates by a complex of human FEN-1 and PCNA.

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

RNA polymerase II stalled at a thymine dimer: footprint and effect on excision repair

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Analysis of the open region of RNA polymerase II transcription complexes in the early phase of elongation

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Differential requirement for the ATPase domain of the Cockayne syndrome group B gene in the processing of UV-induced DNA damage and 8-oxoguanine lesions in human cells

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Functional consequences of mutations in the conserved SF2 motifs and post-translational phosphorylation of the CSB protein

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Functional domains within FEN-1 and RAD2 define a family of structure-specific endonucleases: implications for nucleotide excision repair

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

The xeroderma pigmentosum group D (XPD) gene: one gene, two functions, three diseases

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Ten years of TFIIH.

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Structural basis of transcription: separation of RNA from DNA by RNA polymerase II

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Recruitment of the putative transcription-repair coupling factor CSB/ERCC6 to RNA polymerase II elongation complexes

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Postnatal growth failure, short life span, and early onset of cellular senescence and subsequent immortalization in mice lacking the xeroderma pigmentosum group G gene

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

ATP-dependent chromatin remodeling by the Cockayne syndrome B DNA repair-transcription-coupling factor.

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Requirement for yeast RAD26, a homolog of the human CSB gene, in elongation by RNA polymerase II

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Strong functional interactions of TFIIH with XPC and XPG in human DNA nucleotide excision repair, without a preassembled repairosome

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Definition of a short region of XPG necessary for TFIIH interaction and stable recruitment to sites of UV damage

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Deficiency in the nuclease activity of xeroderma pigmentosum G in mice leads to hypersensitivity to UV irradiation

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Identification of the XPG region that causes the onset of Cockayne syndrome by using Xpg mutant mice generated by the cDNA-mediated knock-in method

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Cockayne syndrome and xeroderma pigmentosum

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

Rescue of arrested RNA polymerase II complexes

1 reference

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2005.09.022

7 January 2021

based on heuristic

inferred from DOI database lookup

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10.1016/J.MOLCEL.2005.09.022

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