(Q24310511)

GOA release 2020-03-11

DNA cytosine deamination

1 reference

GOA release 2020-03-11

author

Amalio Telenti

10

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author name string

Yannick Bulliard

1

0 references

Iñigo Narvaiza

2

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Alessandro Bertero

3

0 references

Shyam Peddi

4

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Ute F Röhrig

5

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Millán Ortiz

6

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Vincent Zoete

7

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Nataly Castro-Díaz

8

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Priscilla Turelli

9

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Olivier Michielin

11

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Matthew D Weitzman

12

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Didier Trono

Structural model for deoxycytidine deamination mechanisms of the HIV-1 inactivation enzyme APOBEC3G

13

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language of work or name

English

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publication date

February 2011

0 references

published in

Journal of Virology

0 references

volume

85

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page(s)

1765-76

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issue

4

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cites work

1 reference

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Crystal structure of the APOBEC3G catalytic domain reveals potential oligomerization interfaces

19 March 2017

1 reference

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APOBEC3 proteins mediate the clearance of foreign DNA from human cells

19 March 2017

1 reference

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Deaminase-independent inhibition of parvoviruses by the APOBEC3A cytidine deaminase

19 March 2017

1 reference

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An extended structure of the APOBEC3G catalytic domain suggests a unique holoenzyme model

19 March 2017

1 reference

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Structure, interaction and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G

19 March 2017

1 reference

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Crystal structure of the anti-viral APOBEC3G catalytic domain and functional implications

19 March 2017

1 reference

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7SL RNA mediates virion packaging of the antiviral cytidine deaminase APOBEC3G

19 March 2017

1 reference

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Targeting APOBEC3A to the viral nucleoprotein complex confers antiviral activity

19 March 2017

1 reference

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All APOBEC3 family proteins differentially inhibit LINE-1 retrotransposition

19 March 2017

1 reference

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19 March 2017

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APOBEC3A is a potent inhibitor of adeno-associated virus and retrotransposons

19 March 2017

1 reference

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APOBEC3A and APOBEC3B are potent inhibitors of LTR-retrotransposon function in human cells

19 March 2017

1 reference

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Mutational comparison of the single-domained APOBEC3C and double-domained APOBEC3F/G anti-retroviral cytidine deaminases provides insight into their DNA target site specificities

19 March 2017

1 reference

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19 March 2017

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19 March 2017

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Production of high-titer recombinant adeno-associated virus vectors in the absence of helper adenovirus

19 March 2017

1 reference

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Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

The APOBEC-2 crystal structure and functional implications for the deaminase AID

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

All-atom empirical potential for molecular modeling and dynamics studies of proteins

19 March 2017

1 reference

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19 March 2017

1 reference

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EMBOSS: the European Molecular Biology Open Software Suite

19 March 2017

1 reference

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Comparative protein modelling by satisfaction of spatial restraints

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

RNA-dependent oligomerization of APOBEC3G is required for restriction of HIV-1

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Interaction with 7SL RNA but not with HIV-1 genomic RNA or P bodies is required for APOBEC3F virion packaging

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Stoichiometry of the antiviral protein APOBEC3G in HIV-1 virions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Psoriasis upregulated phorbolin-1 shares structural but not functional similarity to the mRNA-editing protein apobec-1

19 March 2017

1 reference

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19 March 2017

1 reference

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Cytidine deamination of retroviral DNA by diverse APOBEC proteins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

High frequency retrotransposition in cultured mammalian cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Adaptive evolution of Mus Apobec3 includes retroviral insertion and positive selection at two clusters of residues flanking the substrate groove

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Determinants of sequence-specificity within human AID and APOBEC3G

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Functional analysis and structural modeling of human APOBEC3G reveal the role of evolutionarily conserved elements in the inhibition of human immunodeficiency virus type 1 infection and Alu transposition.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Defining APOBEC3 expression patterns in human tissues and hematopoietic cell subsets

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Model structure of APOBEC3C reveals a binding pocket modulating ribonucleic acid interaction required for encapsidation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

A portable hot spot recognition loop transfers sequence preferences from APOBEC family members to activation-induced cytidine deaminase.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

AID can restrict L1 retrotransposition suggesting a dual role in innate and adaptive immunity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

APOBEC3G inhibits elongation of HIV-1 reverse transcripts

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Functional domain organization of human APOBEC3G.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Evidence for editing of human papillomavirus DNA by APOBEC3 in benign and precancerous lesions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Vpr.A3A chimera inhibits HIV replication

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Deaminase-independent inhibition of HIV-1 reverse transcription by APOBEC3G.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

APOBEC3G inhibits DNA strand transfer during HIV-1 reverse transcription.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Differential inhibition of long interspersed element 1 by APOBEC3 does not correlate with high-molecular-mass-complex formation or P-body association

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Myeloid differentiation and susceptibility to HIV-1 are linked to APOBEC3 expression

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Effect of adenovirus-mediated RNA interference on endogenous microRNAs in a mouse model of multidrug resistance protein 2 gene silencing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

APOBEC3 proteins inhibit human LINE-1 retrotransposition

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Cellular inhibitors of long interspersed element 1 and Alu retrotransposition.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

A Tetrahymena thermophila ribozyme-based indicator gene to detect transposition of marked retroelements in mammalian cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Assessing protein structures with a non-local atomic interaction energy.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Extensive mutagenesis experiments corroborate a structural model for the DNA deaminase domain of APOBEC3G.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Blind docking of 260 protein-ligand complexes with EADock 2.0.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

EADock: docking of small molecules into protein active sites with a multiobjective evolutionary optimization.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

Human apolipoprotein B mRNA-editing enzyme-catalytic polypeptide-like 3G (APOBEC3G) is incorporated into HIV-1 virions through interactions with viral and nonviral RNAs.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3028873

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

29 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1128%2FJVI.01651-10