(Q24490032)

Malvika Sharan

4

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Claire Maudet

Claire Maudet

1

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Miguel Mano

Miguel Mano

2

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Mauro Giacca

Mauro Giacca

5

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author name string

Ushasree Sunkavalli

READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data

3

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language of work or name

English

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publication date

22 August 2014

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published in

Nature Communications

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volume

5

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page(s)

4718

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cites work

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MicroRNAs: genomics, biogenesis, mechanism, and function

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Small silencing RNAs: an expanding universe

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Interplay between microRNAs and RNA-binding proteins determines developmental processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Physiological and pathological roles for microRNAs in the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

MicroRNAs and the cell cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Causes and consequences of microRNA dysregulation in cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Pervasive roles of microRNAs in cardiovascular biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Viruses and microRNAs: RISCy interactions with serious consequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

The mammalian microRNA response to bacterial infections

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

MicroRNAs and bacterial infection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

The global burden of nontyphoidal Salmonella gastroenteritis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Type III effector-mediated processes in Salmonella infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Salmonellae interplay with host cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Analysis of the host microRNA response to Salmonella uncovers the control of major cytokines by the let-7 family

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

RNAi screen of Salmonella invasion shows role of COPI in membrane targeting of cholesterol and Cdc42

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Genome-wide RNAi screen for host factors required for intracellular bacterial infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Genome-wide analysis of the host intracellular network that regulates survival of Mycobacterium tuberculosis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Combined agonist-antagonist genome-wide functional screening identifies broadly active antiviral microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Functional screening identifies miRNAs inducing cardiac regeneration.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Cutting edge: bacterial flagellin activates basolaterally expressed TLR5 to induce epithelial proinflammatory gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

MiR-15 and miR-16 are direct transcriptional targets of E2F1 that limit E2F-induced proliferation by targeting cyclin E

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Living with or without cyclins and cyclin-dependent kinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

The miR-15a-miR-16-1 cluster controls prostate cancer by targeting multiple oncogenic activities

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

miR-16 family induces cell cycle arrest by regulating multiple cell cycle genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

MicroRNA-26a/b and their host genes cooperate to inhibit the G1/S transition by activating the pRb protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

microRNA-9 suppresses the proliferation, invasion and metastasis of gastric cancer cells through targeting cyclin D1 and Ets1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

MiR-7 triggers cell cycle arrest at the G1/S transition by targeting multiple genes including Skp2 and Psme3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Neisseria gonorrhoeae infection causes a G1 arrest in human epithelial cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

A bacterial effector targets Mad2L2, an APC inhibitor, to modulate host cell cycling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Staphylococcus aureus-induced G2/M phase transition delay in host epithelial cells increases bacterial infective efficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Selective small-molecule inhibitor reveals critical mitotic functions of human CDK1

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

A candidate approach implicates the secreted Salmonella effector protein SpvB in P-body disassembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Emerging role for RNA-based regulation in plant immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

E2f3a and E2f3b contribute to the control of cell proliferation and mouse development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Mouse development with a single E2F activator.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

The E2F1-3 transcription factors are essential for cellular proliferation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

miR-15a and miR-16-1 in cancer: discovery, function and future perspectives

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Cyclomodulins: bacterial effectors that modulate the eukaryotic cell cycle.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Cytolethal distending toxin: a conserved bacterial genotoxin that blocks cell cycle progression, leading to apoptosis of a broad range of mammalian cell lineages

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Bacterial cyclomodulin Cif blocks the host cell cycle by stabilizing the cyclin-dependent kinase inhibitors p21 and p27.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Helicobacter pylori interferes with an embryonic stem cell micro RNA cluster to block cell cycle progression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

The Salmonella spvB virulence gene encodes an enzyme that ADP-ribosylates actin and destabilizes the cytoskeleton of eukaryotic cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Actin is ADP-ribosylated by the Salmonella enterica virulence-associated protein SpvB.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

The spvB gene-product of the Salmonella enterica virulence plasmid is a mono(ADP-ribosyl)transferase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Actin cytoskeleton dynamics and the cell division cycle.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Induction of G2/M arrest, endoreduplication, and apoptosis by actin depolymerization agent pextenotoxin-2 in human leukemia cells, involving activation of ERK and JNK.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Novel tools to analyze the function of Salmonella effectors show that SvpB ectopic expression induces cell cycle arrest in tumor cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Bacteria and host interactions in the gut epithelial barrier

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Bacterial interactions with the host epithelium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Preferential invasion of mitotic cells by Salmonella reveals that cell surface cholesterol is maximal during metaphase

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Fast mapping of short sequences with mismatches, insertions and deletions using index structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Differential expression analysis for sequence count data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

A Plant miRNA Contributes to Antibacterial Resistance by Repressing Auxin Signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

Evidence for an accessory protein function for Toll-like receptor 1 in anti-bacterial responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

inferred from DOI database lookup

7 January 2021

based on heuristic

Interaction with the p6 domain of the gag precursor mediates incorporation into virions of Vpr and Vpx proteins from primate lentiviruses

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

inferred from DOI database lookup

7 January 2021

based on heuristic

Flow cytometric analysis of the cell cycle in transfected cells without cell fixation

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5718

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NCOMMS5718

1 reference

Consolidated OpenCitations Corpus – April 2017

Dimensions Publication ID

ADS bibcode

2014NatCo...5.4718M

0 references

1040995904

0 references

Fatcat ID

release_2atgvziprnbcxblijqkpmbml34

0 references

1 reference

Consolidated OpenCitations Corpus – April 2017

PubMed publication ID

25146723

1 reference

Consolidated OpenCitations Corpus – April 2017