(Q24531531)

4 July 2017

Prediction of water and metal binding sites and their affinities by using the Fold-X force field (English)

1 reference

4 July 2017

0 references

Ivo C Martins

3

0 references

Jesper Ferkinghoff-Borg

4

object named as

Jesper Ferkinghoff-Borg

1 reference

4 July 2017

Joost W H Schymkowitz

1

1 reference

4 July 2017

Frederic Rousseau

2

1 reference

4 July 2017

Francois Stricher

5

1 reference

4 July 2017

Luis Serrano

6

1 reference

4 July 2017

language of work or name

English

0 references

publication date

8 July 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

4 July 2017

1 reference

4 July 2017

102

1 reference

4 July 2017

10147-10152

1 reference

4 July 2017

29

1 reference

The FoldX web server: an online force field

4 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Calmodulin structure refined at 1.7 A resolution

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Structure of native and apo carbonic anhydrase II and structure of some of its anion-ligand complexes

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

An efficient hybrid explicit/implicit solvent method for biomolecular simulations

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Transition Metal Speciation in the Cell: Insights from the Chemistry of Metal Ion Receptors

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Improving implicit solvent simulations: a Poisson-centric view

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

A "solvated rotamer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Recent advances in the development and application of implicit solvent models in biomolecule simulations

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

The tryptophan switch: changing ligand-binding specificity from type I to type II in SH3 domains

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Calculation of mutational free energy changes in transition states for protein folding

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Energy estimation in protein design

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Engineering novel metalloproteins: design of metal-binding sites into native protein scaffolds.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Protein design based on folding models

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

The SH3-fold family: experimental evidence and prediction of variations in the folding pathways

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Effective energy functions for protein structure prediction.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Recognizing protein binding sites using statistical descriptions of their 3D environments

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

27 September 2017

Metalloprotein design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Predicting Ca(2+)-binding sites in proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Determinants that govern high-affinity calcium binding.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Where metal ions bind in proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Structural Aspects of Metal Liganding to Functional Groups in Proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

The role of metals in enzyme activity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Identification of sequences encoding the detoxification metalloisomerase glyoxalase I in microbial genomes from several pathogenic organisms

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Local water bridges and protein conformational stability

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Protein-DNA interactions: A structural analysis

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Predicting the rate enhancement of protein complex formation from the electrostatic energy of interaction.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Modelling of solvent positions around polar groups in proteins.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177371

Growth dynamics of isotactic polypropylene single crystals during isothermal crystallization from a miscible polymeric solvent.

30 May 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501980102

Implicit solvation based on generalized Born theory in different dielectric environments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501980102

A detailed thermodynamic analysis of ras/effector complex interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501980102

The prediction and characterization of metal binding sites in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501980102

Design of a calcium-binding protein with desired structure in a cell adhesion molecule.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501980102

Rational design of a calcium-binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501980102

Novel metal-binding proteins by design

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0501980102

The Effect of Mg2+ on the Ca2+-Binding Properties and Ca2+-Induced Tyrosine-Fluorescence Changes of Calmodulin Isolated from Rabbit Skeletal Muscle

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16006526

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Iron and copper transport in yeast and its relevance to human disease

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16006526

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Calcium binding to calmodulin: effects of ionic strength, Mg2+, pH and temperature

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16006526

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0501980102

1 reference

OpenCitations bibliographic resource ID

4 July 2017

0 references

3575909

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference