Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q24545695)
Watch
English
The molecular population genetics of HIV-1 group O
scientific article
In more languages
edit
Statements
instance of
scholarly article
0 references
title
The molecular population genetics of HIV-1 group O
(English)
0 references
main subject
population genetics
1 reference
based on heuristic
inferred from title
author
Andrew Rambaut
series ordinal
3
0 references
Philippe Lemey
series ordinal
1
0 references
Anne-Mieke Vandamme
series ordinal
8
0 references
Oliver G. Pybus
series ordinal
2
0 references
Alexei J. Drummond
object named as
Alexei J Drummond
series ordinal
4
0 references
Pierre Roques
object named as
Pierre Roques
series ordinal
6
0 references
Michael Worobey
series ordinal
7
object named as
Michael Worobey
0 references
author name string
David L Robertson
series ordinal
5
0 references
language of work or name
English
0 references
publication date
July 2004
0 references
published in
Genetics
0 references
volume
167
0 references
page(s)
1059-68
0 references
issue
3
0 references
cites work
Tracing the origin and history of the HIV-2 epidemic
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
24 March 2017
Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
24 March 2017
The origins of acquired immune deficiency syndrome viruses: where and when?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
24 March 2017
Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
24 March 2017
Codon-substitution models for heterogeneous selection pressure at amino acid sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
24 March 2017
MODELTEST: testing the model of DNA substitution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
24 March 2017
PAML: a program package for phylogenetic analysis by maximum likelihood
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
24 March 2017
Dating the common ancestor of SIVcpz and HIV-1 group M and the origin of HIV-1 subtypes using a new method to uncover clock-like molecular evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
24 March 2017
Timing the ancestor of the HIV-1 pandemic strains
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
24 March 2017
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
24 March 2017
Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
24 March 2017
Estimation of effective population size of HIV-1 within a host: a pseudomaximum-likelihood approach
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
24 March 2017
Divergence time and evolutionary rate estimation with multilocus data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
7 April 2017
An approximately unbiased test of phylogenetic tree selection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
7 April 2017
Estimating the rate of evolution of the rate of molecular evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
7 April 2017
Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
7 April 2017
Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
7 April 2017
The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: a Bayesian coalescent approach
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
Phylogenetic analysis of 49 newly derived HIV-1 group O strains: high viral diversity but no group M-like subtype structure.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
A coalescent-based method for detecting and estimating recombination from gene sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
An integrated framework for the inference of viral population history from reconstructed genealogies.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
env sequences of simian immunodeficiency viruses from chimpanzees in Cameroon are strongly related to those of human immunodeficiency virus group N from the same geographic area
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
Maximum likelihood estimation of population growth rates based on the coalescent
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
Geographical distribution of HIV-1 group O viruses in Africa
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
HIV-1 group O virus identified for the first time in the United States
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
A new subtype of human immunodeficiency virus type 1 (MVP-5180) from Cameroon
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
Recombination in AIDS viruses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
Variability of human immunodeficiency virus type 1 group O strains isolated from Cameroonian patients living in France
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
Isolation and partial characterization of an unusual human immunodeficiency retrovirus from two persons of west-central African origin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
27 September 2017
A novel approach to detecting and measuring recombination: new insights into evolution in viruses, bacteria, and mitochondria
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
30 May 2018
HIV-1 group O infection in Cameroon, 1986 to 1998.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
30 May 2018
Identification of a new human immunodeficiency virus type 1 distinct from group M and group O.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
30 May 2018
Serological and virological characterization of HIV-1 group O infection in Cameroon.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
30 May 2018
Sampling theory for neutral alleles in a varying environment.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
30 May 2018
Evaluation of HIV type 1 group O isolates: identification of five phylogenetic clusters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
28 November 2018
A randomized trial of nelfinavir, ritonavir, or delavirdine in combination with saquinavir-SGC and stavudine in treatment-experienced HIV-1-infected patients
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
28 November 2018
Reconstructing genealogies of serial samples under the assumption of a molecular clock using serial-sample UPGMA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
28 November 2018
HIV-1 nomenclature proposal.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
28 November 2018
Limitations of a molecular clock applied to considerations of the origin of HIV-1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
28 November 2018
Genetic analysis of HIV type 1 group O p24gag sequences from Cameroon and Equatorial Guinea.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
28 November 2018
Antigenic evidence of the presence of the aberrant HIV-1ant70 virus in Cameroon and Gabon.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
28 November 2018
The coalescent in two colonies with symmetric migration.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470933
retrieved
28 November 2018
A Note on Reported Levels of Estrone in Laying Hens’ Blood
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15280223
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Update on HIV-1 group O infection in Equatorial Guinea, Central Africa
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15280223
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Recombination and the molecular clock
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15280223
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Isolation and envelope sequence of a highly divergent HIV-1 isolate: definition of a new HIV-1 group.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1534%2FGENETICS.104.026666
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Measurably evolving populations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1534%2FGENETICS.104.026666
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Ancestral inference from samples of DNA sequences with recombination.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1534%2FGENETICS.104.026666
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
GENIE: estimating demographic history from molecular phylogenies.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1534%2FGENETICS.104.026666
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1534%2FGENETICS.104.026666
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Exploring the demographic history of DNA sequences using the generalized skyline plot
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1534%2FGENETICS.104.026666
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1534%2FGENETICS.104.026666
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Revealing the history of infectious disease epidemics through phylogenetic trees
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1534%2FGENETICS.104.026666
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
On the Genealogy of Large Populations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1534%2FGENETICS.104.026666
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1534/GENETICS.104.026666
0 references
PMCID
1470933
0 references
PubMed ID
15280223
0 references
ResearchGate publication ID
8430176
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
