(Q24596281)

8

0 references

Lior Pachter

7

object named as

Lior Pachter

0 references

Cole Trapnell

3

object named as

Cole Trapnell

0 references

author name string

Julius B Lucks

1

0 references

Stefanie A Mortimer

2

0 references

Shujun Luo

4

0 references

Sharon Aviran

5

0 references

Gary P Schroth

6

0 references

Adam P Arkin

Proceedings of the National Academy of Sciences of the United States of America

9

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language of work or name

English

0 references

publication date

5 July 2011

0 references

published in

0 references

volume

108

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page(s)

11063-8

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issue

27

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cites work

RNAstructure: software for RNA secondary structure prediction and analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

Crystal structure of the specificity domain of ribonuclease P

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

Modeling and automation of sequencing-based characterization of RNA structure

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

Versatile RNA-sensing transcriptional regulators for engineering genetic networks

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

Genome-wide measurement of RNA secondary structure in yeast

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

SHAPE-directed RNA secondary structure prediction

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

Atomic accuracy in predicting and designing noncanonical RNA structure

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

27 September 2017

The centrality of RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

Ligand-dependent folding of the three-way junction in the purine riboswitch

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

27 September 2017

RNA synthetic biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

Toward global RNA structure analysis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131332

Time-resolved RNA SHAPE chemistry

30 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1106501108

RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1106501108

A mutate-and-map strategy for inferring base pairs in structured nucleic acids: proof of concept on a DNA/RNA helix

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1106501108

Antisense RNA-mediated transcriptional attenuation: an in vitro study of plasmid pT181

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21642531

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structure-independent and quantitative ligation of single-stranded DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21642531

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1106501108

1 reference

1586294

ADS bibcode

2011PNAS..10811063L

0 references

1586294

1 reference

1 reference

1 reference