(Q24599864)

Vagheesh Narasimhan

4

0 references

Nicola Segata

Nicola Segata

1

0 references

Olivier Jousson

Olivier Jousson

5

0 references

Levi Waldron

Levi Waldron

2

0 references

Annalisa Ballarini

3

Integrative analysis of environmental sequences using MEGAN4

Annalisa Ballarini

0 references

language of work or name

English

0 references

publication date

August 2012

0 references

published in

Nature Methods

0 references

volume

9

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page(s)

811-4

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issue

8

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

A human gut microbial gene catalogue established by metagenomic sequencing

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

KEGG for representation and analysis of molecular networks involving diseases and drugs

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

A core gut microbiome in obese and lean twins

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Mapping short DNA sequencing reads and calling variants using mapping quality scores

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

MEGAN analysis of metagenomic data

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

PhymmBL expanded: confidence scores, custom databases, parallelization and more

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Vaginal microbiome of reproductive-age women

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

The integrated microbial genomes system: an expanding comparative analysis resource

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Basic local alignment search tool

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Enterotypes of the human gut microbiome

24 March 2017

1 reference

https://api.crossref.org/works/10.1038/NMETH.2066

A simple, fast, and accurate method of phylogenomic inference

22 April 2017

1 reference

https://api.crossref.org/works/10.1038/NMETH.2066

Search and clustering orders of magnitude faster than BLAST

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

NCBI Reference Sequences: current status, policy and new initiatives

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Toward an efficient method of identifying core genes for evolutionary and functional microbial phylogenies

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Classifying short genomic fragments from novel lineages using composition and homology.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Taxonomic classification of metagenomic shotgun sequences with CARMA3.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Microbial metatranscriptomics in a permanent marine oxygen minimum zone.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

NBC: the Naive Bayes Classification tool webserver for taxonomic classification of metagenomic reads

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Bifidobacterium animalis subsp. lactis fermented milk product reduces inflammation by altering a niche for colitogenic microbes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Accurate phylogenetic classification of variable-length DNA fragments

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Molecular identification of bacteria associated with bacterial vaginosis.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

27 September 2017

The metagenomics of soil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Microbial community genomics in the ocean

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Taxonomic metagenome sequence assignment with structured output models

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Aligning short reads to reference alignments and trees.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

A framework for human microbiome research

28 November 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2066

inferred from DOI database lookup

7 January 2021

based on heuristic

Metagenome fragment classification using N-mer frequency profiles

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2066

inferred from DOI database lookup

7 January 2021

based on heuristic

RAIphy: phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2066

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NMETH.2066

1 reference

Dimensions Publication ID

151094

1010611135

0 references

151094

1 reference

1 reference

1 reference