(Q24604646)

22 June 2017

The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models (English)

1 reference

22 June 2017

Jane Shelby Richardson

11

Jane S Richardson

0 references

David C. Richardson

10

David C Richardson

1 reference

22 June 2017

Daniel A Keedy

1

0 references

Vincent B Chen

5

Vincent B Chen

1 reference

22 June 2017

3

Jeffrey J Headd

1 reference

22 June 2017

6

Gary J Kapral

1 reference

22 June 2017

Christopher J Williams

2

Christopher J Williams

1 reference

22 June 2017

8

Jeremy N Block

1 reference

22 June 2017

4

W Bryan Arendall

1 reference

22 June 2017

Robert A Gillespie

7

1 reference

22 June 2017

Adam Zemla

9

1 reference

22 June 2017

language of work or name

English

0 references

publication date

1 January 2009

1 reference

22 June 2017

21

0 references

published in

Proteins

1 reference

22 June 2017

77 Suppl 9

1 reference

22 June 2017

S9

0 references

page(s)

29-49

1 reference

Target domain definition and classification in CASP8

22 June 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

KinImmerse: Macromolecular VR for NMR ensembles

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

LGA: A method for finding 3D similarities in protein structures

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

The kinemage: A tool for scientific communication

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Structure of the guide-strand-containing argonaute silencing complex

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

How amino-acid insertions are allowed in an alpha-helix of T4 lysozyme

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Searching protein structure databases with DaliLite v.3

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Assessment of CASP7 predictions for template-based modeling targets

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Assessment of CASP7 predictions in the high accuracy template-based modeling category

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Assessment of predictions submitted for the CASP6 comparative modeling category

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Evaluation of template-based models in CASP8 with standard measures

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

A graph-theory algorithm for rapid protein side-chain prediction

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

The penultimate rotamer library

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Assessment of CASP8 structure predictions for template free targets

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Assessment of the protein-structure refinement category in CASP8

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Progress from CASP6 to CASP7.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Prediction of global and local model quality in CASP7 using Pcons and ProQ.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

New tools and expanded data analysis capabilities at the Protein Structure Prediction Center

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Assessment of fold recognition predictions in CASP6.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

A test of enhancing model accuracy in high-throughput crystallography

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

The Uppsala Electron-Density Server

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

CASP5 assessment of fold recognition target predictions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Assessment of homology-based predictions in CASP5.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

The Protein Data Bank and the challenge of structural genomics

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Accurate bond and angle parameters for X-ray protein structure refinement

27 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPROT.22551

Assessment of disorder predictions in CASP8

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

Solution NMR structures of IgG binding domains with artificially evolved high levels of sequence identity but different folds

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877634

The penultimate rotamer library

28 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPROT.22551

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1002/PROT.22551

1 reference

OpenCitations bibliographic resource ID

22 June 2017

4744081

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference