(Q24607271)

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KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data

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KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data (English)

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metabolic pathway

1 reference

based on heuristic

inferred from title

Minoru Kanehisa

17

object named as

Minoru Kanehisa

author given names

Minoru

author last names

Kanehisa

1 reference

PubMed publication ID

29 November 2023

object named as

Takeshi Ara

2

author given names

Takeshi

author last names

Ara

1 reference

PubMed publication ID

29 November 2023

object named as

Kazuki Saito

19

author given names

Kazuki

author last names

Saito

1 reference

PubMed publication ID

29 November 2023

11

object named as

Asaph Aharoni

author given names

Asaph

author last names

Aharoni

1 reference

PubMed publication ID

29 November 2023

Daisuke Shibata

20

author given names

Daisuke

author last names

Shibata

object named as

Daisuke Shibata

1 reference

PubMed publication ID

29 November 2023

author name string

Nozomu Sakurai

1

author given names

Nozomu

author last names

Sakurai

1 reference

PubMed publication ID

29 November 2023

Yoshiyuki Ogata

3

author given names

Yoshiyuki

author last names

Ogata

1 reference

PubMed publication ID

29 November 2023

Ryosuke Sano

4

author given names

Ryosuke

author last names

Sano

1 reference

PubMed publication ID

29 November 2023

Takashi Ohno

5

author given names

Takashi

author last names

Ohno

1 reference

PubMed publication ID

29 November 2023

Kenjiro Sugiyama

6

author given names

Kenjiro

author last names

Sugiyama

1 reference

PubMed publication ID

29 November 2023

Atsushi Hiruta

7

author given names

Atsushi

author last names

Hiruta

1 reference

PubMed publication ID

29 November 2023

Kiyoshi Yamazaki

8

author given names

Kiyoshi

author last names

Yamazaki

1 reference

PubMed publication ID

29 November 2023

Kentaro Yano

9

author given names

Kentaro

author last names

Yano

1 reference

PubMed publication ID

29 November 2023

Koh Aoki

10

author given names

Koh

author last names

Aoki

1 reference

PubMed publication ID

29 November 2023

Kazuki Hamada

12

author given names

Kazuki

author last names

Hamada

1 reference

PubMed publication ID

29 November 2023

Koji Yokoyama

13

author given names

Koji

author last names

Yokoyama

1 reference

PubMed publication ID

29 November 2023

Shingo Kawamura

14

author given names

Shingo

author last names

Kawamura

1 reference

PubMed publication ID

29 November 2023

Hirofumi Otsuka

15

author given names

Hirofumi

author last names

Otsuka

1 reference

PubMed publication ID

29 November 2023

Toshiaki Tokimatsu

16

author given names

Toshiaki

author last names

Tokimatsu

1 reference

PubMed publication ID

29 November 2023

Hideyuki Suzuki

18

author given names

Hideyuki

author last names

Suzuki

1 reference

PubMed publication ID

29 November 2023

language of work or name

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publication date

January 2011

0 references

Nucleic Acids Research

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39

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Database issue

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D677-84

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copyright license

Creative Commons Attribution-NonCommercial 2.5 Generic

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Stability of metabolic correlations under changing environmental conditions in Escherichia coli--a systems approach

1 reference

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7 April 2017

Coordinated concentration changes of transcripts and metabolites in Saccharomyces cerevisiae

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

7 April 2017

Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

10 May 2017

CoP: a database for characterizing co-expressed gene modules with biological information in plants

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27 September 2017

Visualization of omics data for systems biology

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27 September 2017

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

Web-based resources for mass-spectrometry-based metabolomics: a user's guide

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27 September 2017

ATTED-II provides coexpressed gene networks for Arabidopsis

1 reference

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27 September 2017

Beyond the sarcomere: CSRP3 mutations cause hypertrophic cardiomyopathy

1 reference

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27 September 2017

MassTRIX: mass translator into pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

COXPRESdb: a database of coexpressed gene networks in mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

Consistency analysis of metabolic correlation networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

Current progress in computational metabolomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

Approaches for extracting practical information from gene co-expression networks in plant biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

Development and implementation of an algorithm for detection of protein complexes in large interaction networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

Plant metabolomics: from holistic hope, to hype, to hot topic.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

KEGG-based pathway visualization tool for complex omics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

Ontological analysis of gene expression data: current tools, limitations, and open problems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

Differential metabolic networks unravel the effects of silent plant phenotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

27 September 2017

Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

30 May 2018

Metabolomic networks in plants: Transitions from pattern recognition to biological interpretation.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ989

21 January 2018

Differential metabolomics unraveling light/dark regulation of metabolic activities in Arabidopsis cell culture.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ989

21 January 2018

The prediction of local modular structures in a co-expression network based on gene expression datasets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

28 November 2018

MEGU: pathway mapping web-service based on KEGG and SVG

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013809

28 November 2018

Identification of a Flavonol 7-O-Rhamnosyltransferase Gene Determining Flavonoid Pattern inArabidopsisby Transcriptome Coexpression Analysis and Reverse Genetics

1 reference

https://pubmed.ncbi.nlm.nih.gov/21097783

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKQ989

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

DBLP publication ID

journals/nar/SakuraiAOSOSHYYAAHYKOTKSSS11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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