(Q24622076)

12

0 references

Gordon Dougan

24

0 references

Andries J van Tonder

Andries van Tonder

21

0 references

Graham Rose

Graham Rose

19

0 references

Richard Stabler

Richard A Stabler

4

0 references

Kat Holt

Kathryn E Holt

7

0 references

Michael Andrew Quail

9

Michael A Quail

0 references

Brendan W Wren

23

Brendan W Wren

0 references

Stephen D Bentley

14

Stephen D Bentley

0 references

Richard Rance

10

Richard Rance

0 references

Craig Corton

17

Craig Corton

0 references

Mohammed Sebaihia

2

Mohammed Sebaihia

0 references

Trevor Lawley

3

Trevor D Lawley

0 references

Helena Seth-Smith

8

Helena M B Seth-Smith

0 references

author name string

Miao He

1

0 references

Lisa F Dawson

5

0 references

Melissa J Martin

6

0 references

Karen Brooks

11

0 references

David Harris

13

0 references

Christine Burrows

15

0 references

Louise Clark

16

0 references

Vicky Murray

18

0 references

Scott Thurston

20

0 references

Danielle Walker

Proceedings of the National Academy of Sciences of the United States of America

22

0 references

language of work or name

English

0 references

publication date

20 April 2010

0 references

published in

0 references

volume

107

0 references

issue

16

0 references

page(s)

7527-32

0 references

cites work

The population genetics of dN/dS

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Mapping short DNA sequencing reads and calling variants using mapping quality scores

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Versatile and open software for comparing large genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Improved tools for biological sequence comparison

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

BEAST: Bayesian evolutionary analysis by sampling trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

PAML 4: phylogenetic analysis by maximum likelihood

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Artemis: sequence visualization and annotation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Comparisons of dN/dS are time dependent for closely related bacterial genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Application of phylogenetic networks in evolutionary studies

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Bayesian coalescent inference of past population dynamics from molecular sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Calibrating bacterial evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Mauve: multiple alignment of conserved genomic sequence with rearrangements

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

ACT: the Artemis Comparison Tool

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Proteomic and genomic characterization of highly infectious Clostridium difficile 630 spores

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Shaping a bacterial genome by large chromosomal replacements, the evolutionary history of Streptococcus agalactiae.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Increasing prevalence of toxin A-negative, toxin B-positive isolates of Clostridium difficile in Korea: impact on laboratory diagnosis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Inference of bacterial microevolution using multilocus sequence data

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Narrative review: the new epidemic of Clostridium difficile-associated enteric disease

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Comparative phylogenomics of Clostridium difficile reveals clade specificity and microevolution of hypervirulent strains

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

An epidemic, toxin gene-variant strain of Clostridium difficile

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

A predominantly clonal multi-institutional outbreak of Clostridium difficile-associated diarrhea with high morbidity and mortality

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

The relative contributions of recombination and point mutation to the diversification of bacterial clones

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Epidemics of diarrhea caused by a clindamycin-resistant strain of Clostridium difficile in four hospitals

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Bacterial population genetics, evolution and epidemiology

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Estimates of the overall rate of growth of the intestinal microflora of hamsters, guinea pigs, and mice.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Actin-specific ADP-ribosyltransferase produced by a Clostridium difficile strain

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Restriction endonuclease DNA analysis of Clostridium difficile

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Antibiotic-Associated Pseudomembranous Colitis Due to Toxin-Producing Clostridia

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

ABACAS: algorithm-based automatic contiguation of assembled sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Distribution of Clostridium difficile strains from a North American, European and Australian trial of treatment for C. difficile infections: 2005-2007.

30 May 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914322107

Distinct ribotypes and rates of antimicrobial drug resistance in Clostridium difficile from Shanghai and Stockholm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914322107

Emergence of Clostridium difficile infection due to a new hypervirulent strain, polymerase chain reaction ribotype 078.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914322107

Clonal divergence in Escherichia coli as a result of recombination, not mutation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914322107

A comparison of homologous recombination rates in bacteria and archaea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914322107

Emergence and Control of Fluoroquinolone-Resistant, Toxin A–Negative, Toxin B–Positive Clostridium difficile

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914322107

Distribution and antimicrobial susceptibility patterns of Clostridium difficile PCR ribotypes in English hospitals, 2007-08.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867753

Localized sex in bacteria

28 November 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914322107

First isolation of Clostridium difficile PCR ribotype 027, toxinotype III in Belgium

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20368420

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Spread and Epidemiology of Clostridium difficile Polymerase Chain Reaction Ribotype 027/Toxinotype III in The Netherlands

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20368420

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Distribution of Clostridium difficile PCR ribotype 027 in British hospitals

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20368420

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0914322107

1 reference

ADS bibcode

2010PNAS..107.7527H

0 references

1 reference

1 reference

PubMed publication ID

20368420

1 reference