(Q24623917)

1

0 references

Ping Dong

2

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Ryan Tarpine

3

0 references

Sorin Istrail

Proceedings of the National Academy of Sciences of the United States of America

4

0 references

language of work or name

English

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publication date

23 February 2010

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published in

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volume

107

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issue

8

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page(s)

3930-5

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cites work

A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

The genome of the sea urchin Strongylocentrotus purpuratus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Primer3 on the WWW for general users and for biologist programmers

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

ChIP-seq accurately predicts tissue-specific activity of enhancers

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

A genomic regulatory network for development

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

A novel method for prokaryotic promoter prediction based on DNA stability

7 April 2017

1 reference

https://api.crossref.org/works/10.1073/PNAS.1000147107

Common regulatory variation impacts gene expression in a cell type-dependent manner

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Direct multiplexed measurement of gene expression with color-coded probe pairs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Gene regulatory networks and the evolution of animal body plans

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

PCR fusion-based approach to create reporter gene constructs for expression analysis in transgenic C. elegans

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Genomic control of patterning

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

The evolution of hierarchical gene regulatory networks

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Shadow enhancers as a source of evolutionary novelty

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Global regulatory logic for specification of an embryonic cell lineage

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Human genome ultraconserved elements are ultraselected

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Testing the molecular clock: molecular and paleontological estimates of divergence times in the Echinoidea (Echinodermata).

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Ontogenic activation of a fusion gene introduced into sea urchin eggs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Precise gene fusion by PCR.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

The cis-regulatory system of the tbrain gene: Alternative use of multiple modules to promote skeletogenic expression in the sea urchin embryo.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Exclusive developmental functions of gatae cis-regulatory modules in the Strongylocentrorus purpuratus embryo

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

The conserved AAUAAA hexamer of the poly(A) signal can act alone to trigger a stable decrease in RNA polymerase II transcription velocity

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Origins of immunity: transcription factors and homologues of effector genes of the vertebrate immune system expressed in sea urchin coelomocytes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Direct introduction of cloned DNA into the sea urchin zygote nucleus, and fate of injected DNA

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

Differential stability of expression of similarly specified endogenous and exogenous genes in the sea urchin embryo

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840491

A protocol describing the principles of cis-regulatory analysis in the sea urchin

30 May 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1000147107

R11: a cis-regulatory node of the sea urchin embryo gene network that controls early expression of SpDelta in micromeres

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1000147107

Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1000147107

Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1000147107

The C2H2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1000147107

Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1000147107

Cis-regulatory analysis of nodal and maternal control of dorsal-ventral axis formation by Univin, a TGF- related to Vg1

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20142491

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Introduction of cloned DNA into sea urchin egg cytoplasm: replication and persistence during embryogenesis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20142491

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Using reporter genes to study cis-regulatory elements

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1000147107