(Q24628063)

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Evolution of a distinct genomic domain in Drosophila: comparative analysis of the dot chromosome in Drosophila melanogaster and Drosophila virilis

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Evolution of a distinct genomic domain in Drosophila: comparative analysis of the dot chromosome in Drosophila melanogaster and Drosophila virilis (English)

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Drosophila melanogaster

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Drosophila virilis

object named as

Drosophila virilis

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based on heuristic

inferred from title

30

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Michelle S. Itano

object named as

Michelle S Itano

5

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object named as

Leah Sabin

22

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object named as

Craig B Wilen

28

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Justin M Richner

20

object named as

Justin M Richner

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4

object named as

Jeannette Wong

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7

object named as

Elmer Kellmann

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author name string

Wilson Leung

1

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Christopher D Shaffer

2

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Taylor Cordonnier

3

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Elizabeth E Slawson Tempel

6

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David Michael Desruisseau

8

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Carolyn Cain

9

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Robert Carrasquillo

10

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Tien M Chusak

11

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Katazyna Falkowska

12

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Kelli D Grim

13

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Rui Guan

14

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Jacquelyn Honeybourne

15

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Sana Khan

16

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Louis Lo

17

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Rebecca McGaha

18

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Jevon Plunkett

19

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Ryan Richt

21

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Anita Shah

23

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Anushree Sharma

24

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Sonal Singhal

25

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Fine Song

13

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Christopher Swope

27

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Jeremy Buhler

29

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Sarah C R Elgin

31

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language of work or name

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publication date

August 2010

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185

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4

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1519-34

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Jalview Version 2--a multiple sequence alignment editor and analysis workbench

1 reference

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7 April 2017

Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome

1 reference

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7 April 2017

Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochromatic domains

1 reference

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7 April 2017

Gene finding in novel genomes

1 reference

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7 April 2017

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1 reference

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7 April 2017

The Bioperl toolkit: Perl modules for the life sciences

1 reference

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7 April 2017

The human genome browser at UCSC

1 reference

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7 April 2017

The 'effective number of codons' used in a gene

1 reference

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7 April 2017

Evolution of genes and genomes on the Drosophila phylogeny

1 reference

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7 April 2017

Clustal W and Clustal X version 2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

7 April 2017

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

7 April 2017

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

7 April 2017

Tandem repeats finder: a program to analyze DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

7 April 2017

Prediction of complete gene structures in human genomic DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

7 April 2017

Repbase Update, a database of eukaryotic repetitive elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

7 April 2017

De novo identification of repeat families in large genomes

1 reference

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7 April 2017

Automated de novo identification of repeat sequence families in sequenced genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

7 April 2017

The Ka/Ks ratio: diagnosing the form of sequence evolution

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

7 April 2017

https://pubmed.ncbi.nlm.nih.gov/20479145

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recombination yet inefficient selection along the Drosophila melanogaster subgroup's fourth chromosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

An investigation of heterochromatin domains on the fourth chromosome of Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Constraint and turnover in sex-biased gene expression in the genus Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Sequence finishing and mapping of Drosophila melanogaster heterochromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Mutants and Crossing over in the Dot-like Chromosome of DROSOPHILA VIRILIS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Improved repeat identification and masking in Dipterans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Element 1360 and RNAi components contribute to HP1-dependent silencing of a pericentric reporter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

FlyBase: genomes by the dozen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

The dot chromosome of Drosophila: insights into chromatin states and their change over evolutionary time

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

The contradictory definitions of heterochromatin: transcription and silencing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Evolution of heterochromatic genes of Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

PILER: identification and classification of genomic repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

cis-Acting determinants of heterochromatin formation on Drosophila melanogaster chromosome four

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Occurrence and consequences of coding sequence insertions and deletions in Mammalian genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Recombination, dominance and selection on amino acid polymorphism in the Drosophila genome: contrasting patterns on the X and fourth chromosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Majority of divergence between closely related DNA samples is due to indels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Comparative gene prediction in human and mouse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Heterochromatin: new possibilities for the inheritance of structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Comparative and functional studies of Drosophila species invasion by the gypsy endogenous retrovirus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

GeneSplicer: a new computational method for splice site prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

The correlation between intron length and recombination in drosophila. Dynamic equilibrium between mutational and selective forces.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

GeneID in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Evolution of codon usage bias in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Cloning and analysis of the mobile element gypsy from D. virilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Lack of polymorphism on the Drosophila fourth chromosome resulting from selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

27 September 2017

Reduced efficacy of selection in regions of the Drosophila genome that lack crossing over

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

30 May 2018

Creating a honey bee consensus gene set

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

30 May 2018

Integrating genomic homology into gene structure prediction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

30 May 2018

Drosophila virilis has long and highly polymorphic microsatellites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

30 May 2018

The paleontology of intergene retrotransposons of maize.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

30 May 2018

High intrinsic rate of DNA loss in Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

30 May 2018

Distribution patterns of HP1, a heterochromatin-associated nonhistone chromosomal protein of Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

30 May 2018

Variation in the ratio of nucleotide substitution and indel rates across genomes in mammals and bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

28 November 2018

Reduced effectiveness of selection caused by a lack of recombination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

28 November 2018

Chromosomal evolution: inversions: the chicken or the egg?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

28 November 2018

Localization and transcription of a retrotransposon-derived element on the maize B chromosome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

28 November 2018

Genome evolution: recombination speeds up adaptive evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

28 November 2018

Patterns of insertion and deletion in contrasting chromatin domains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

28 November 2018

On the abundance and distribution of transposable elements in the genome of Drosophila melanogaster.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

28 November 2018

GRIMM: genome rearrangements web server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

28 November 2018

Nucleotide variation along the Drosophila melanogaster fourth chromosome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

28 November 2018

Intron size and natural selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

28 November 2018

Genome size and intron size in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927774

28 November 2018

The effect of linkage on limits to artificial selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/20479145

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A simple and fast secondary structure prediction method using hidden neural networks.

1 reference

https://api.crossref.org/works/10.1534%2FGENETICS.110.116129

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1534/GENETICS.110.116129

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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