(Q24630576)

English

Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method

scientific article

In more languages

default values for all languages

No label defined

No description defined

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method (English)

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

0 references

1 reference

based on heuristic

inferred from title

object named as

Li Deng

2

0 references

Melissa Beth Duhaime

object named as

Melissa B Duhaime

1

0 references

author name string

Bonnie T Poulos

3

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

Matthew B Sullivan

4

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

language of work or name

0 references

publication date

20 June 2012

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

Environmental Microbiology

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

14

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

9

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

2526-2537

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

Unlocking short read sequencing for metagenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Whole genome amplification and de novo assembly of single bacterial cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

The marine viromes of four oceanic regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Genetic organization of the psbAD region in phages infecting marine Synechococcus strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Transfer of photosynthesis genes to and from Prochlorococcus viruses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Genomic analysis of uncultured marine viral communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Prodigal: prokaryotic gene recognition and translation initiation site identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Functional metagenomic profiling of nine biomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

10 May 2017

Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Linear amplification for deep sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Effects of polymerase, template dilution and cycle number on PCR based 16 S rRNA diversity analysis using the deep sequencing method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Analysis of high-throughput sequencing and annotation strategies for phage genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Current insights into phage biodiversity and biogeography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Assembling the marine metagenome, one cell at a time

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Modeling the fitness consequences of a cyanophage-encoded photosynthesis gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

The microbial engines that drive Earth's biogeochemical cycles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Sequencing genomes from single cells by polymerase cloning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Environmental whole-genome amplification to access microbial populations in contaminated sediments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Transcription of a 'photosynthetic' T4-type phage during infection of a marine cyanobacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Genomic islands and the ecology and evolution of Prochlorococcus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Photosynthesis genes in marine viruses yield proteins during host infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Marine ecosystems: bacterial photosynthesis genes in a virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Archaeal dUTPase enhances PCR amplifications with archaeal DNA polymerases by preventing dUTP incorporation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

Archaebacterial DNA polymerases tightly bind uracil-containing DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

DNA purification and isolation using a solid-phase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

27 September 2017

A simple and efficient method for concentration of ocean viruses by chemical flocculation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

30 May 2018

Explaining microbial population genomics through phage predation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

30 May 2018

Evaluation of Phi29-based whole-genome amplification for microarray-based comparative genomic hybridisation.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2012.02791.X

21 January 2018

Genomic island variability facilitates Prochlorococcus-virus coexistence

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2012.02791.X

21 January 2018

Carrying photosynthesis genes increases ecological fitness of cyanophage in silico

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2012.02791.X

21 January 2018

DNA stable-isotope probing.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2012.02791.X

21 January 2018

Multiple displacement amplification compromises quantitative analysis of metagenomes

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2012.02791.X

21 January 2018

Wide distribution of a novel pmoA-like gene copy among type II methanotrophs, and its expression in Methylocystis strain SC2

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2012.02791.X

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1111/J.1462-2920.2012.02791.X

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q24630576&oldid=1510924206"