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PLAST: parallel local alignment search tool for database comparison

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Europe PubMed Central

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PLAST: parallel local alignment search tool for database comparison (English)

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Van Hoa Nguyen

1

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Dominique Lavenier

series ordinal

2

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language of work or name

English

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publication date

2009

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published in

BMC Bioinformatics

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volume

10

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issue

1

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page(s)

329

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copyright license

Creative Commons Attribution 2.0 Generic

start time

12 October 2009

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-10-329

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cites work

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

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7 April 2017

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

retrieved

7 April 2017

Basic local alignment search tool

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

retrieved

7 April 2017

Identification of common molecular subsequences

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

retrieved

7 April 2017

Bioinformatics challenges of new sequencing technology

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

retrieved

27 September 2017

Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

retrieved

27 September 2017

Striped Smith-Waterman speeds database searches six times over other SIMD implementations

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

retrieved

27 September 2017

Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

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27 September 2017

The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

retrieved

27 September 2017

The ASTRAL Compendium in 2004

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

retrieved

27 September 2017

Local alignment statistics

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stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

retrieved

27 September 2017

Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

retrieved

27 September 2017

Aligning two sequences within a specified diagonal band

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

retrieved

30 May 2018

On subset seeds for protein alignment.

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

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28 November 2018

The impact of next-generation sequencing technology on genetics

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

retrieved

28 November 2018

Six-fold speed-up of Smith-Waterman sequence database searches using parallel processing on common microprocessors.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770072

retrieved

28 November 2018

Microarchitecture of the Godson-2 Processor

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Crossref

reference URL

https://api.crossref.org/works/10.1186%2F1471-2105-10-329

retrieved

7 January 2021

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Identifiers

DOI

10.1186/1471-2105-10-329

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DBLP publication ID

journals/bmcbi/NguyenL09

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stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

Dimensions Publication ID

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ResearchGate publication ID

26887701

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(Q24647089)

PLAST: parallel local alignment search tool for database comparison

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