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pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows

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title

pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows (English)

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3

Robert Giegerich

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author name string

Jens Reeder

series ordinal

1

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Peter Steffen

series ordinal

2

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language of work or name

English

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publication date

July 2007

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published in

Nucleic Acids Research

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volume

35

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page(s)

W320-4

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issue

Web Server issue

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cites work

PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures

1 reference

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PubMed Central

reference URL

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7 April 2017

A three-stemmed mRNA pseudoknot in the SARS coronavirus frameshift signal

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PubMed Central

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7 April 2017

Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933184

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7 April 2017

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

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PubMed Central

reference URL

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7 April 2017

Crystal structure of a hepatitis delta virus ribozyme

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PubMed Central

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7 April 2017

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

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PubMed Central

reference URL

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retrieved

7 April 2017

A dynamic programming algorithm for RNA structure prediction including pseudoknots

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7 April 2017

Identification of functional, endogenous programmed -1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae

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PubMed Central

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28 September 2017

Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function

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28 September 2017

The chemical repertoire of natural ribozymes

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PubMed Central

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retrieved

28 September 2017

RNA pseudoknot prediction in energy-based models

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PubMed Central

reference URL

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28 September 2017

RNA movies: visualizing RNA secondary structure spaces

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PubMed Central

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retrieved

28 September 2017

Complete suboptimal folding of RNA and the stability of secondary structures.

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PubMed Central

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retrieved

30 May 2018

Identifiers

DOI

10.1093/NAR/GKM258

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1204287

DBLP publication ID

journals/nar/ReederSG07

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

OpenCitations bibliographic resource ID

1204287

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1204287

ResearchGate publication ID

6350815

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(Q24684593)

pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows

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