(Q24801031)

3 July 2017

DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway (English)

1 reference

3 July 2017

1

Bram van den Broek

0 references

author name string

Maarten C Noom

series ordinal

2

1 reference

PubMed ID

15886396

3 July 2017

Gijs J L Wuite

series ordinal

3

1 reference

PubMed ID

15886396

3 July 2017

language of work or name

English

0 references

publication date

10 May 2005

1 reference

3 July 2017

Nucleic Acids Research

1 reference

3 July 2017

33

1 reference

3 July 2017

8

1 reference

3 July 2017

2676-2684

1 reference

How do site-specific DNA-binding proteins find their targets?

3 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Structure of BamHI bound to nonspecific DNA: a model for DNA sliding

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Crystallographic snapshots along a protein-induced DNA-bending pathway

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Structural and energetic origins of indirect readout in site-specific DNA cleavage by a restriction endonuclease

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Conformational transitions and structural deformability of EcoRV endonuclease revealed by crystallographic analysis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

The bacteriophage straight phi29 portal motor can package DNA against a large internal force

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Entropic elasticity of lambda-phage DNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Simultaneous DNA binding and bending by EcoRV endonuclease observed by real-time fluorescence

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Protein motion from non-specific to specific DNA by three-dimensional routes aided by supercoiling

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

How to get from A to B: strategies for analysing protein motion on DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

The energetics of the interaction of BamHI endonuclease with its recognition site GGATCC.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

One- and three-dimensional pathways for proteins to reach specific DNA sites

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

An integrated laser trap/flow control video microscope for the study of single biomolecules

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Single-molecule studies of the effect of template tension on T7 DNA polymerase activity.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Divalent metal dependence of site-specific DNA binding by EcoRV endonuclease.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Single-molecule imaging of RNA polymerase-DNA interactions in real time

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Reactions of the eco RV restriction endonuclease with fluorescent oligodeoxynucleotides: identical equilibrium constants for binding to specific and non-specific DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Specific binding by EcoRV endonuclease to its DNA recognition site GATATC.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Linear diffusion of the restriction endonuclease EcoRV on DNA is essential for the in vivo function of the enzyme

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Structure of restriction endonuclease BamHI and its relationship to EcoRI.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Biological applications of optical forces

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Rapid reaction analysis of the catalytic cycle of the EcoRV restriction endonuclease.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Facilitated target location in biological systems

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Accuracy of the EcoRI restriction endonuclease: binding and cleavage studies with oligodeoxynucleotide substrates containing degenerate recognition sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Catalytic roles of divalent metal ions in phosphoryl transfer by EcoRV endonuclease

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

The energetic basis of specificity in the Eco RI endonuclease--DNA interaction.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Modes of DNA cleavage by the EcoRV restriction endonuclease.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Discrimination between DNA sequences by the EcoRV restriction endonuclease.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Single-molecule analysis of DNA uncoiling by a type II topoisomerase.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

DNA cleavage by the EcoRV restriction endonuclease: pH dependence and proton transfers in catalysis

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Force and velocity measured for single molecules of RNA polymerase.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1092278

EcoRV restriction endonuclease binds all DNA sequences with equal affinity

28 November 2018

1 reference

12 December 2020

Determination of the DNA bend angle induced by the restriction endonuclease EcoRV in the presence of Mg2+

1 reference

12 December 2020

The EcoRV modification methylase causes considerable bending of DNA upon binding to its recognition sequence GATATC

1 reference

12 December 2020

Hopping, jumping and looping by restriction enzymes

1 reference

12 December 2020

The activity of the EcoRV restriction endonuclease is influenced by flanking DNA sequences both inside and outside the DNA-protein complex

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKI565

1 reference

3 July 2017

0 references

1 reference

PubMed ID

15886396