(Q24804213)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15500694%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

title

The structurally constrained protein evolution model accounts for sequence patterns of the LbetaH superfamily (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15500694%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15500694%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

Julian Echave

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15500694%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

author name string

Julián Echave

series ordinal

2

0 references

language of work or name

English

0 references

publication date

22 October 2004

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15500694%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

published in

BMC Evolutionary Biology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15500694%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

volume

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15500694%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

page(s)

41

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15500694%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1186/1471-2148-4-41

4 January 2020

issue

1

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exact match

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cites work

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7 April 2017

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The relation between the divergence of sequence and structure in proteins

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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On Some Principles Governing Molecular Evolution

7 April 2017

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Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

7 April 2017

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Construction of phylogenetic trees

7 April 2017

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Using protein design for homology detection and active site searches

7 April 2017

1 reference

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Protein evolution with dependence among codons due to tertiary structure.

28 September 2017

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Exploring protein sequence space using knowledge-based potentials.

28 September 2017

1 reference

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Molecular phylogenetics: state-of-the-art methods for looking into the past

28 September 2017

1 reference

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Computational method to reduce the search space for directed protein evolution

28 September 2017

1 reference

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Models of protein sequence evolution and their applications.

28 September 2017

1 reference

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Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space

28 September 2017

1 reference

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Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function

28 September 2017

1 reference

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Neutral networks in protein space: a computational study based on knowledge-based potentials of mean force

28 September 2017

1 reference

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Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks

28 September 2017

1 reference

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How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins

28 September 2017

1 reference

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Evolution and the tertiary structure of proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538250

Secondary structure-based profiles: use of structure-conserving scoring tables in searching protein sequence databases for structural similarities

28 September 2017

1 reference

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The novel hexapeptide motif found in the acyltransferases LpxA and LpxD of lipid A biosynthesis is conserved in various bacteria

28 September 2017

1 reference

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Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538250

The role of internal packing interactions in determining the structure and stability of a protein

30 May 2018

1 reference

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Eight bacterial proteins, including UDP-N-acetylglucosamine acyltransferase (LpxA) and three other transferases of Escherichia coli, consist of a six-residue periodicity theme

30 May 2018

1 reference

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Connectivity of Neutral Networks, Overdispersion, and Structural Conservation in Protein Evolution

30 May 2018

1 reference

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Lack of self-averaging in neutral evolution of proteins

28 November 2018

1 reference

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Site-specific amino acid replacement matrices from structurally constrained protein evolution simulations

28 November 2018

1 reference

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Residues participating in the protein folding nucleus do not exhibit preferential evolutionary conservation.

28 November 2018

1 reference

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Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.

28 November 2018

1 reference

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Understanding hierarchical protein evolution from first principles 1 1Edited by J. Thornton

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538250

The effect of branch length variation on the selection of models of molecular evolution.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538250

Using protein structural information in evolutionary inference: transmembrane proteins

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538250

Neutral evolution of model proteins: diffusion in sequence space and overdispersion

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538250

Positional dependence, cliques, and predictive motifs in the bHLH protein domain

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538250

Evolution of model proteins on a foldability landscape.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538250

Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation 1 1Edited by F. E. Cohen

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538250

Combining protein evolution and secondary structure

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538250

Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538250

Evolutionary Analysis of γ-Carbonic Anhydrase and Structurally Related Proteins

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15500694

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structural constraints and emergence of sequence patterns in protein evolution

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15500694

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2148-4-41

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15500694%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

4 January 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-4-41

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15500694%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

1 reference