(Q24811478)

4 July 2017

Susceptibility to superhelically driven DNA duplex destabilization: a highly conserved property of yeast replication origins (English)

1 reference

4 July 2017

Prashanth Ak

1

1 reference

PubMed ID

16103908

4 July 2017

Craig J Benham

series ordinal

2

1 reference

PubMed ID

16103908

4 July 2017

language of work or name

English

0 references

publication date

24 June 2005

1 reference

PLOS Computational Biology

4 July 2017

1 reference

4 July 2017

1

1 reference

4 July 2017

1

1 reference

4 July 2017

e7

1 reference

Creative Commons Attribution 4.0 International

4 July 2017

start time

24 June 2005

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Prediction of Saccharomyces cerevisiae replication origins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

The B2 element of the Saccharomyces cerevisiae ARS1 origin of replication requires specific sequences to facilitate pre-RC formation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

The dynamic response of upstream DNA to transcription-generated torsional stress

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication origin

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

A yeast chromosomal origin of DNA replication defined by multiple functional elements

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

DNA sequence required for efficient transcription termination in yeast

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

WEB-THERMODYN: Sequence analysis software for profiling DNA helical stability

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

DNA replication joins the revolution: whole-genome views of DNA replication in budding yeast

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

Ease of DNA unwinding is a conserved property of yeast replication origins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory loci

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

A DNA unwinding element and an ARS consensus comprise a replication origin within a yeast chromosome.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

Stable DNA unwinding, not "breathing," accounts for single-strand-specific nuclease hypersensitivity of specific A+T-rich sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

Inhibition of DNA supercoiling-dependent transcriptional activation by a distant B-DNA to Z-DNA transition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

The analysis of stress-induced duplex destabilization in long genomic DNA sequences

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

Role for a region of helically unstable DNA within the Epstein-Barr virus latent cycle origin of DNA replication oriP in origin function

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

Replication dynamics of the yeast genome.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

Activation of gene expression by a novel DNA structural transmission mechanism that requires supercoiling-induced DNA duplex destabilization in an upstream activating sequence

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183513

Duplex destabilization in superhelical DNA is predicted to occur at specific transcriptional regulatory regions

28 November 2018

1 reference

12 December 2020

Energetics of the strand separation transition in superhelical DNA

1 reference

12 December 2020

Unpaired structures in SCA10 (ATTCT)n.(AGAAT)n repeats

1 reference

12 December 2020

Computational simulation of DNA melting and its application to denaturing gradient gel electrophoresis

1 reference

12 December 2020

Exact method for numerically analyzing a model of local denaturation in superhelically stressed DNA

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.0010007

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1371/JOURNAL.PCBI.0010007

1 reference

4 July 2017

journals/ploscb/AkB05

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

4 July 2017

1 reference

PubMed ID

16103908