(Q24814545)

4 July 2017

title

Variation in structural location and amino acid conservation of functional sites in protein domain families (English)

1 reference

4 July 2017

3

Jörg Schultz

Jörg

Schultz

1 reference

4 July 2017

Birgit Pils

1

Birgit

Pils

1 reference

4 July 2017

Richard R Copley

series ordinal

2

author given names

Richard R

author last names

Copley

1 reference

4 July 2017

language of work or name

English

0 references

publication date

25 August 2005

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4 July 2017

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4 July 2017

volume

6

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4 July 2017

issue

1

0 references

page(s)

210

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The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema

4 July 2017

cites work

1 reference

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SMART, a simple modular architecture research tool: identification of signaling domains

7 April 2017

1 reference

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2.8-A crystal structure of a nontoxic type-II ribosome-inactivating protein, ebulin l

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

The atomic structure of protein-protein recognition sites

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

SMART 4.0: towards genomic data integration

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

A hot spot of binding energy in a hormone-receptor interface

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

An evolutionary trace method defines binding surfaces common to protein families

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Searching for functional sites in protein structures.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Prediction of functional sites by analysis of sequence and structure conservation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Ligand binding: functional site location, similarity and docking

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Evolutionary predictions of binding surfaces and interactions.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Analysis of protein-protein interaction sites using surface patches

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Identification of the ligand binding sites on the molecular surface of proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Analysis of heregulin symmetry by weighted evolutionary tracing

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Structure and evolution of ricin B chain

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Network Analysis of Protein Structures Identifies Functional Residues

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Accurate Detection of Protein:Ligand Binding Sites Using Molecular Dynamics Simulations

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Finding functional sites in structural genomics proteins.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Using orthologous and paralogous proteins to identify specificity-determining residues in bacterial transcription factors.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Protein-DNA interactions: amino acid conservation and the effects of mutations on binding specificity

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Protein-protein interfaces: analysis of amino acid conservation in homodimers

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Analysis and prediction of functional sub-types from protein sequence alignments.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1215474

Hydrophobic patches on protein subunit interfaces: characteristics and prediction

28 November 2018

1 reference

12 December 2020

Conservation of Orientation and Sequence in Protein Domain–Domain Interactions

1 reference

12 December 2020

Interaction interfaces of protein domains are not topologically equivalent across families within superfamilies: Implications for metabolic and signaling pathways

1 reference

12 December 2020

Practical limits of function prediction

1 reference

12 December 2020

Estimating amino acid substitution models: a comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method

1 reference

12 December 2020

Structural clusters of evolutionary trace residues are statistically significant and common in proteins

1 reference

12 December 2020

The Relationship Between Sequence and Interaction Divergence in Proteins

1 reference

12 December 2020

Ricin B chain is a product of gene duplication

1 reference

12 December 2020

Morphology of protein-protein interfaces.

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-6-210

1 reference

4 July 2017

DBLP publication ID

journals/bmcbi/PilsCS05

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

4 July 2017

1 reference