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Local protein structure prediction using discriminative models
scientific article
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
1368994
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16405736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
title
Local protein structure prediction using discriminative models
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
1368994
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16405736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
main subject
protein structure
0 references
protein structure prediction
0 references
author
Thomas Lengauer
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
1368994
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16405736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
author name string
Oliver Sander
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
1368994
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16405736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
Ingolf Sommer
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
1368994
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16405736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
language of work or name
English
0 references
publication date
11 January 2006
1 reference
stated in
Europe PubMed Central
PMC publication ID
1368994
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16405736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
published in
BMC Bioinformatics
1 reference
stated in
Europe PubMed Central
PMC publication ID
1368994
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16405736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
volume
7
1 reference
stated in
Europe PubMed Central
PMC publication ID
1368994
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16405736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
issue
1
0 references
page(s)
14
1 reference
stated in
Europe PubMed Central
PMC publication ID
1368994
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16405736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
cites work
The Protein Data Bank
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1368994
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7 April 2017
Prediction of protein secondary structure at better than 70% accuracy
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PubMed Central
reference URL
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7 April 2017
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1368994
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7 April 2017
Database of homology-derived protein structures and the structural meaning of sequence alignment
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PubMed Central
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7 April 2017
A structural alphabet for local protein structures: improved prediction methods
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PubMed Central
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28 September 2017
A hidden markov model derived structural alphabet for proteins.
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28 September 2017
Evaluation of local structure alphabets based on residue burial.
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PubMed Central
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28 September 2017
Rosetta predictions in CASP5: successes, failures, and prospects for complete automation.
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28 September 2017
A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1368994
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28 September 2017
More than the sum of their parts: on the evolution of proteins from peptides
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PubMed Central
reference URL
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28 September 2017
Have we seen all structures corresponding to short protein fragments in the Protein Data Bank? An update
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1368994
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28 September 2017
Small libraries of protein fragments model native protein structures accurately.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1368994
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28 September 2017
Ab initio protein structure prediction: progress and prospects.
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PubMed Central
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28 September 2017
Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks
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PubMed Central
reference URL
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28 September 2017
Hidden Markov model approach for identifying the modular framework of the protein backbone.
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PubMed Central
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28 September 2017
The HSSP database of protein structure-sequence alignments and family profiles
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PubMed Central
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28 September 2017
Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1368994
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28 September 2017
Patterns, structures, and amino acid frequencies in structural building blocks, a protein secondary structure classification scheme
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1368994
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28 September 2017
Local sequence-structure correlations in proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1368994
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28 September 2017
Global properties of the mapping between local amino acid sequence and local structure in proteins
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1368994
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28 September 2017
Recurring local sequence motifs in proteins.
1 reference
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PubMed Central
reference URL
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28 September 2017
Selection of representative protein data sets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1368994
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28 September 2017
Automatic definition of recurrent local structure motifs in proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1368994
retrieved
31 May 2018
Efficient remote homology detection using local structure.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1368994
retrieved
28 November 2018
Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1368994
retrieved
28 November 2018
Protein local structure prediction from sequence
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16405736
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Protein fragment clustering and canonical local shapes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16405736
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/1471-2105-7-14
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3811397
stated in
Europe PubMed Central
PMC publication ID
1368994
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16405736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
DBLP publication ID
journals/bmcbi/SanderSL06
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1010696153
0 references
OpenCitations bibliographic resource ID
3811397
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3811397
PMC publication ID
1368994
1 reference
stated in
Europe PubMed Central
PMC publication ID
1368994
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16405736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
PubMed publication ID
16405736
1 reference
stated in
Europe PubMed Central
PMC publication ID
1368994
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16405736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
ResearchGate publication ID
7365773
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