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Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources.
scientific article
Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources
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Statements
instance of
scholarly article
1 reference
stated in
PubMed
PubMed ID
27336457
retrieved
12 August 2016
title
Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources.
(English)
1 reference
stated in
PubMed
PubMed ID
27336457
retrieved
12 August 2016
main subject
WikiPathways
0 references
SPARQL
0 references
Semantic Web
0 references
author
Andra Waagmeester
series ordinal
1
stated as
Andra Waagmeester
affiliation
Department of Bioinformatics - BiGCaT
0 references
Egon Willighagen
series ordinal
5
affiliation
Department of Bioinformatics - BiGCaT
0 references
Chris T. Evelo
series ordinal
6
stated as
Chris T Evelo
0 references
Martina Summer-Kutmon
series ordinal
2
0 references
Alexander R. Pico
series ordinal
7
affiliation
Gladstone Institutes
0 references
Ryan Miller
series ordinal
4
0 references
Anders Riutta
stated as
Anders Riutta
series ordinal
3
0 references
language of work or name
English
0 references
publication date
June 2016
0 references
number of pages
11
0 references
published in
PLOS Computational Biology
0 references
volume
12
0 references
page(s)
e1004989
0 references
issue
6
0 references
cites work
WikiPathways: capturing the full diversity of pathway knowledge
objective of project or action
uses method in cited work
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
The application of the open pharmacological concepts triple store (Open PHACTS) to support drug discovery research
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
HMDB 3.0--The Human Metabolome Database in 2013
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
Identifiers.org and MIRIAM Registry: community resources to provide persistent identification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
Entrez Gene: gene-centered information at NCBI
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
Pathway Commons, a web resource for biological pathway data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
Presenting and exploring biological pathways with PathVisio
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
The ChEMBL bioactivity database: an update
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
Open PHACTS: semantic interoperability for drug discovery
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
PubChem Substance and Compound databases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
WikiPathways: building research communities on biological pathways
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
Ensembl 2016
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
BioModels: Content, Features, Functionality, and Use
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
UniProt: a hub for protein information
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
Ten years of pathway analysis: current approaches and outstanding challenges
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
The Systems Biology Graphical Notation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
7 April 2017
PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
28 September 2017
Finding the right questions: exploratory pathway analysis to enhance biological discovery in large datasets.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
28 September 2017
Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
28 September 2017
Molecular interaction maps of bioregulatory networks: a general rubric for systems biology.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
28 September 2017
PAX of mind for pathway researchers.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
28 September 2017
Systems biology markup language: Level 2 and beyond.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918977
retrieved
28 September 2017
WikiPathways Project: At the Intersection of Big Data and Researcher Knowledge
0 references
ChemSpider: An Online Chemical Information Resource
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004989
retrieved
21 January 2018
When owl:sameAs Isn’t the Same: An Analysis of Identity in Linked Data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004989
retrieved
21 January 2018
Identifiers
DOI
10.1371/JOURNAL.PCBI.1004989
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
557464
OpenCitations bibliographic resource ID
557464
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
557464
PMCID
4918977
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
557464
PubMed ID
27336457
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
557464
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