(Q26752426)

Europe PubMed Central

2 August 2019

Europe PubMed Central

19 September 2019

Europe PubMed Central

describes a project that uses

20 September 2020

copyright status

copyrighted

0 references

MIRA

object named as

MIRA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

De novo assembly of human genomes with massively parallel short read sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Minimus: a fast, lightweight genome assembler

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Genome sequencing in microfabricated high-density picolitre reactors

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Biological identifications through DNA barcodes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

RNA sequence analysis using covariance models

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Deep sequencing of mixed total DNA without barcodes allows efficient assembly of highly plastic ascidian mitochondrial genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Next-generation museomics disentangles one of the largest primate radiations

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

A whole-genome assembly of Drosophila

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Evolution of the cytochrome b gene of mammals

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Mitogenomics of 'Old World Acraea' butterflies reveals a highly divergent 'Bematistes'.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Mitochondrial capture enriches mito-DNA 100 fold, enabling PCR-free mitogenomics biodiversity analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Metagenome Skimming of Insect Specimen Pools: Potential for Comparative Genomics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Soup to Tree: The Phylogeny of Beetles Inferred by Mitochondrial Metagenomics of a Bornean Rainforest Sample

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Phylogenetic community ecology of soil biodiversity using mitochondrial metagenomics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Higher-level phylogeny of paraneopteran insects inferred from mitochondrial genome sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Multiplex sequencing of pooled mitochondrial genomes-a crucial step toward biodiversity analysis using mito-metagenomics.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Bulk de novo mitogenome assembly from pooled total DNA elucidates the phylogeny of weevils (Coleoptera: Curculionoidea)

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

The genome sequence of a widespread apex predator, the golden eagle (Aquila chrysaetos).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Insect mitochondrial genomics: implications for evolution and phylogeny

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Can we name Earth's species before they go extinct?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Conveniently pre-tagged and pre-packaged: extended molecular identification and metagenomics using complete metazoan mitochondrial genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Utility of the DNA barcoding gene fragment for parasitic wasp phylogeny (Hymenoptera: Ichneumonoidea): data release and new measure of taxonomic congruence

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Towards next-generation biodiversity assessment using DNA metabarcoding

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Phylogeography's past, present, and future: 10 years after Avise, 2000.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

A comparative analysis of mitochondrial genomes in Coleoptera (Arthropoda: Insecta) and genome descriptions of six new beetles

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

The promise of DNA barcoding for taxonomy

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Environmental metabarcodes for insects: in silico PCR reveals potential for taxonomic bias

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Integrated shotgun sequencing and bioinformatics pipeline allows ultra-fast mitogenome recovery and confirms substantial gene rearrangements in Australian freshwater crayfishes

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4802855

Mitochondrial DNA and two perspectives on evolutionary genetics

31 May 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

Intraspecific Phylogeography: The Mitochondrial DNA Bridge Between Population Genetics and Systematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

A protocol for species delineation of public DNA databases, applied to the Insecta.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

How to sequence and annotate insect mitochondrial genomes for systematic and comparative genomics research

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

Mitochondrial DNA variants influence mitochondrial bioenergetics in Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

High-throughput monitoring of wild bee diversity and abundance via mitogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

The complete mitogenomes of six higher termite species reconstructed from metagenomic datasets (Cornitermes sp., Cubitermes ugandensis, Microcerotermes parvus, Nasutitermes corniger, Neocapritermes taracua, and Termes hospes).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

MITOS: improved de novo metazoan mitochondrial genome annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

The Seven Great Questions of Systematic Biology: An Essential Foundation for Conservation and the Sustainable Use of Biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

Multi-hierarchical macroecology at species and genetic levels to discern neutral and non-neutral processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

Rapid isolation method of animal mitochondrial DNA by the alkaline lysis procedure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

Rapid isolation of animal mitochondrial DNA in a small fixed-angle rotor at ultrahigh speed

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27006764

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A plea for DNA taxonomy

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

inferred from DOI database lookup

7 January 2021

based on heuristic

Evolution, Weighting, and Phylogenetic Utility of Mitochondrial Gene Sequences and a Compilation of Conserved Polymerase Chain Reaction Primers

1 reference

https://api.crossref.org/works/10.1186%2FS13742-016-0120-Y

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1186/S13742-016-0120-Y

1 reference

Dimensions Publication ID

1037289138

0 references

1 reference

1 reference

PubMed publication ID

27006764

1 reference