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Epigenomic modification and epigenetic regulation in rice
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instance of
scholarly article
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title
Epigenomic modification and epigenetic regulation in rice
(English)
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main subject
heterosis
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author name string
Yu Zhao
series ordinal
1
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Dao-Xiu Zhou
series ordinal
2
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language of work or name
English
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publication date
20 July 2012
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published in
Journal of Genetics and Genomics
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volume
39
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issue
7
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page(s)
307-15
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cites work
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Activation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions
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A "mille-feuille" of silencing: epigenetic control of transposable elements
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Rice histone deacetylase genes display specific expression patterns and developmental functions
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Parent-dependent loss of gene silencing during interspecies hybridization
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Chromatin modification and remodeling during early seed development
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Paramutation in maize: RNA mediated trans-generational gene silencing
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DNA methylation changes detected by methylation-sensitive amplified polymorphism in two contrasting rice genotypes under salt stress.
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Heritable alteration in DNA methylation induced by nitrogen-deficiency stress accompanies enhanced tolerance by progenies to the stress in rice (Oryza sativa L.).
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Diversity of Polycomb group complexes in plants: same rules, different players?
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DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis.
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ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase
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A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development
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An epigenetic mutation responsible for natural variation in floral symmetry
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An active DNA transposon family in rice
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https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
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The plant MITE mPing is mobilized in anther culture.
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https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
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Mobilization of a transposon in the rice genome
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https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
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The complex language of chromatin regulation during transcription
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The Sorghum bicolor genome and the diversification of grasses
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Spontaneous epigenetic variation in the Arabidopsis thaliana methylome.
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A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening.
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OsSPL14 promotes panicle branching and higher grain productivity in rice
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Gardening the genome: DNA methylation in Arabidopsis thaliana
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Plant transposable elements: where genetics meets genomics
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Structure and expression of the rice class-I type histone deacetylase genes OsHDAC1-3: OsHDAC1 overexpression in transgenic plants leads to increased growth rate and altered architecture
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All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents
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Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development
1 reference
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A metastable DWARF1 epigenetic mutant affecting plant stature in rice.
1 reference
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A transcriptomic analysis of superhybrid rice LYP9 and its parents
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Conservation and divergence of methylation patterning in plants and animals
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Local DNA hypomethylation activates genes in rice endosperm
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
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A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
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7 January 2021
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CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome
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Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
1 reference
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Retrotransposons of rice involved in mutations induced by tissue culture
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
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7 January 2021
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inferred from DOI database lookup
Epigenetic inheritance in rice plants
1 reference
stated in
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reference URL
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retrieved
7 January 2021
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inferred from DOI database lookup
OsSET1, a novel SET-domain-containing gene from rice
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
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inferred from DOI database lookup
In planta mobilization of mPing and its putative autonomous element Pong in rice by hydrostatic pressurization
1 reference
stated in
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
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7 January 2021
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inferred from DOI database lookup
Mobilization of the active MITE transposons mPing and Pong in rice by introgression from wild rice (Zizania latifolia Griseb.).
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
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7 January 2021
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inferred from DOI database lookup
Epigenetic programming: the challenge to species hybridization
1 reference
stated in
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Expression, imprinting, and evolution of rice homologs of the polycomb group genes.
1 reference
stated in
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Histone acetyltransferase AtGCN5/HAG1 is a versatile regulator of developmental and inducible gene expression in Arabidopsis
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Rice SUVH histone methyltransferase genes display specific functions in chromatin modification and retrotransposon repression
1 reference
stated in
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reference URL
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retrieved
7 January 2021
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inferred from DOI database lookup
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1 reference
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reference URL
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Polycomb protein Ezh2 regulates pancreatic beta-cell Ink4a/Arf expression and regeneration in diabetes mellitus.
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
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7 January 2021
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inferred from DOI database lookup
Allelic variation and heterosis in maize: how do two halves make more than a whole?
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
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Down-regulation of a SILENT INFORMATION REGULATOR2-related histone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice.
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Allele-specific expression patterns reveal biases and embryo-specific parent-of-origin effects in hybrid maize.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression.
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Euchromatic subdomains in rice centromeres are associated with genes and transcription.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
In Search of the Molecular Basis of Heterosis
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Stress-induced DNA methylation changes and their heritability in asexual dandelions.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)
1 reference
stated in
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Extensive demethylation of repetitive elements during seed development underlies gene imprinting
1 reference
stated in
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Genome-wide demethylation of Arabidopsis endosperm.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Transgenerational epigenetic instability is a source of novel methylation variants
1 reference
stated in
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Hypermethylated SUPERMAN epigenetic alleles in arabidopsis
1 reference
stated in
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Histone methylation in higher plants
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Reversal of histone methylation: biochemical and molecular mechanisms of histone demethylases
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Active DNA demethylation mediated by DNA glycosylases
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Transpositional reactivation of the Dart transposon family in rice lines derived from introgressive hybridization with Zizania latifolia
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Hd3a and RFT1 are essential for flowering in rice
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Epigenetic natural variation in Arabidopsis thaliana
1 reference
stated in
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27.
1 reference
stated in
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Heritable epigenetic variation among maize inbreds
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteins
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The role of histone methylation and H2A.Z occupancy during rapid activation of ethylene responsive genes
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FJ.JGG.2012.02.009
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DOI
10.1016/J.JGG.2012.02.009
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22835977
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