(Q34414767)

2 August 2017

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title

Gardening the genome: DNA methylation in Arabidopsis thaliana (English)

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DNA methylation on cytosine within a CHH sequence

2 August 2017

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Gene Ontology release 2020-05-02

2

Ian R Henderson

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2 August 2017

Simon W-L Chan

1

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PubMed ID

15861207

2 August 2017

Steven E Jacobsen

series ordinal

3

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2 August 2017

1 May 2005

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2 August 2017

Nature Reviews Genetics

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2 August 2017

6

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2 August 2017

351-360

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2 August 2017

5

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https://scigraph.springernature.com/pub.10.1038/nrg1601

2 August 2017

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cites work

Cytosine methylation and the ecology of intragenomic parasites

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DNA methylation and epigenetic inheritance in plants and filamentous fungi

21 January 2018

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Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1).

21 January 2018

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Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis

21 January 2018

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DNA methylation during differentiation of a lower eukaryote, Physarum polycephalum

21 January 2018

1 reference

Characterization of cytosine methylated regions and 5-cytosine DNA methyltransferase (Ehmeth) in the protozoan parasite Entamoeba histolytica

21 January 2018

1 reference

The putative Drosophila methyltransferase gene dDnmt2 is contained in a transposon-like element and is expressed specifically in ovaries

21 January 2018

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dictyBase: a new Dictyostelium discoideum genome database

21 January 2018

1 reference

Evolution of dnmt-2 and mbd-2-like genes in the free-living nematodes Pristionchus pacificus, Caenorhabditis elegans and Caenorhabditis briggsae

21 January 2018

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Structure and function of DNA methyltransferases.

21 January 2018

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DNA methylation patterns and epigenetic memory

21 January 2018

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Epigenetic variation in Arabidopsis disease resistance

21 January 2018

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Epigenetic control of an endogenous gene family is revealed by a novel blue fluorescent mutant of Arabidopsis.

21 January 2018

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A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance

21 January 2018

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Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a.

21 January 2018

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Role of transposable elements in heterochromatin and epigenetic control

21 January 2018

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Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes

21 January 2018

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RNA silencing genes control de novo DNA methylation

21 January 2018

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Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats.

21 January 2018

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Transcriptional silencing and promoter methylation triggered by double-stranded RNA

21 January 2018

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The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene.

21 January 2018

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RNA-DNA interactions and DNA methylation in post-transcriptional gene silencing

21 January 2018

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Position-dependent methylation and transcriptional silencing of transgenes in inverted T-DNA repeats: implications for posttranscriptional silencing of homologous host genes in plants

21 January 2018

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Molecular dissection of the AGAMOUS control region shows that cis elements for spatial regulation are located intragenically

21 January 2018

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Whorl-specific expression of the SUPERMAN gene of Arabidopsis is mediated by cis elements in the transcribed region

21 January 2018

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DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes

21 January 2018

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DNA methylation inhibits elongation but not initiation of transcription in Neurospora crassa.

21 January 2018

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RNA-directed de novo methylation of genomic sequences in plants.

21 January 2018

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Consistent gene silencing in transgenic plants expressing a replicating potato virus X RNA.

21 January 2018

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Potato virus X amplicons in arabidopsis mediate genetic and epigenetic gene silencing

21 January 2018

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Mechanisms of gene silencing by double-stranded RNA

21 January 2018

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Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance

21 January 2018

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SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis

21 January 2018

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An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus

21 January 2018

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Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena

21 January 2018

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Programmed DNA deletion as an RNA-guided system of genome defense.

21 January 2018

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Methylation of histone h3 at lysine 9 targets programmed DNA elimination in tetrahymena

21 January 2018

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Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi

21 January 2018

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Induction of DNA methylation and gene silencing by short interfering RNAs in human cells

21 January 2018

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Small interfering RNA-induced transcriptional gene silencing in human cells

21 January 2018

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RNAi-mediated pathways in the nucleus

21 January 2018

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Conserved plant genes with similarity to mammalian de novo DNA methyltransferases.

21 January 2018

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Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation.

21 January 2018

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Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing

21 January 2018

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Two classes of short interfering RNA in RNA silencing

21 January 2018

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Genetic and functional diversification of small RNA pathways in plants

21 January 2018

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DICER-LIKE1: blind men and elephants in Arabidopsis development

21 January 2018

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The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis

21 January 2018

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The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development.

21 January 2018

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An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation

21 January 2018

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RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production

21 January 2018

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Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.

21 January 2018

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RNA polymerase IV directs silencing of endogenous DNA.

21 January 2018

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Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation.

21 January 2018

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Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate

21 January 2018

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DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis.

21 January 2018

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Demethylation-induced developmental pleiotropy in Arabidopsis

21 January 2018

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Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development

21 January 2018

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Ectopic hypermethylation of flower-specific genes in Arabidopsis

21 January 2018

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Developmental abnormalities and epimutations associated with DNA hypomethylation mutations

21 January 2018

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Maintenance of genomic methylation requires a SWI2/SNF2-like protein.

21 January 2018

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Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1.

21 January 2018

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Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation

21 January 2018

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Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification

21 January 2018

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Lsh, a member of the SNF2 family, is required for genome-wide methylation

21 January 2018

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HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by double-stranded RNA

21 January 2018

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Identification of Arabidopsis histone deacetylase HDA6 mutants that affect transgene expression

21 January 2018

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Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines nuclear organization of rDNA repeats.

21 January 2018

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Histone acetylation and deacetylation in yeast

21 January 2018

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Erasure of CpG methylation in Arabidopsis alters patterns of histone H3 methylation in heterochromatin

21 January 2018

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Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation

21 January 2018

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Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thaliana

21 January 2018

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Site specificity of the Arabidopsis METI DNA methyltransferase demonstrated through hypermethylation of the superman locus

21 January 2018

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Arabidopsis MBD proteins show different binding specificities and nuclear localization

21 January 2018

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Methylated DNA-Binding Proteins from Arabidopsis

21 January 2018

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Ten members of the Arabidopsis gene family encoding methyl-CpG-binding domain proteins are transcriptionally active and at least one, AtMBD11, is crucial for normal development

21 January 2018

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Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins

21 January 2018

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The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase

21 January 2018

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The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation

21 January 2018

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RNA-directed DNA methylation in Arabidopsis

21 January 2018

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RNA-directed transcriptional gene silencing in plants can be inherited independently of the RNA trigger and requires Met1 for maintenance

21 January 2018

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The role of MET1 in RNA-directed de novo and maintenance methylation of CG dinucleotides.

21 January 2018

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Preferential de novo methylation of cytosine residues in non-CpG sequences by a domains rearranged DNA methyltransferase from tobacco plants

21 January 2018

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Hypermethylated SUPERMAN epigenetic alleles in arabidopsis

21 January 2018

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Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene

21 January 2018

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Transcription from an upstream promoter controls methylation signaling from an inverted repeat of endogenous genes in Arabidopsis

21 January 2018

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Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation

21 January 2018

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Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase

21 January 2018

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Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3.

21 January 2018

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Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana.

21 January 2018

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Np95 is a histone-binding protein endowed with ubiquitin ligase activity

21 January 2018

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A histone H3 methyltransferase controls DNA methylation in Neurospora crassa

21 January 2018

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Role of histone H3 lysine 27 methylation in Polycomb-group silencing

21 January 2018

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Role of histone H3 lysine 27 methylation in X inactivation

21 January 2018

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Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation

21 January 2018

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ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation

21 January 2018

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Hairpin RNAs and retrotransposon LTRs effect RNAi and chromatin-based gene silencing

21 January 2018

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ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase

21 January 2018

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DNA glycosylases in the base excision repair of DNA

21 January 2018

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DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis.

21 January 2018

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Maternal control of embryogenesis by MEDEA, a polycomb group gene in Arabidopsis.

21 January 2018

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Imprinting of the MEA Polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylase

21 January 2018

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Applications of DNA tiling arrays for whole-genome analysis

21 January 2018

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MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome

21 January 2018

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The gene for domains rearranged methyltransferase (DRM2) in Arabidopsis thaliana plants is methylated at both cytosine and adenine residues.

21 January 2018

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Sequence specificity of methylation in higher plant DNA

21 January 2018

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Light-regulated transcription of genes encoding peridinin chlorophyll a proteins and the major intrinsic light-harvesting complex proteins in the dinoflagellate amphidinium carterae hulburt (Dinophycae). Changes In cytosine methylation accompany pho

21 January 2018

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Eukaryotic DNA methylation as an evolutionary device

31 March 2020

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One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation

31 March 2020

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Silencing of retrotransposons in arabidopsis and reactivation by the ddm1 mutation

31 March 2020

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

31 March 2020

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Gene silencing mediated by promoter homology occurs at the level of transcription and results in meiotically heritable alterations in methylation and gene activity

31 March 2020

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Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis

31 March 2020

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Deficient in DNA methylation 1 (DDM1) defines a novel family of chromatin-remodeling factors

31 March 2020

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MBD2 is a transcriptional repressor belonging to the MeCP1 histone deacetylase complex

31 March 2020

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Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3

31 March 2020

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Arabidopsis thaliana DNA methylation mutants

31 March 2020

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31 March 2020

Identifiers

DOI

10.1038/NRG1601

1 reference

PubMed ID

15861207

Dimensions Publication ID

2 August 2017

0 references

1 reference

PubMed ID

15861207