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Complexity in the wiring and regulation of plant circadian networks
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title
Complexity in the wiring and regulation of plant circadian networks
(English)
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stated in
PubMed
main subject
circadian rhythm
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author name string
Dawn H. Nagel
series ordinal
1
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Crossref
Steve A. Kay
series ordinal
2
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Crossref
language of work or name
English
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stated in
PubMed
publication date
21 August 2012
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PubMed
published in
Current Biology
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stated in
PubMed
volume
22
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PubMed
issue
16
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PubMed
page(s)
R648-57
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PubMed
cites work
The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops
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Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor
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Photoreceptor regulation of CONSTANS protein in photoperiodic flowering
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Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes
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ELF3 recruitment to the PRR9 promoter requires other Evening Complex members in the Arabidopsis circadian clock
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Interaction of Arabidopsis DET1 with CCA1 and LHY in mediating transcriptional repression in the plant circadian clock.
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The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth
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GIGANTEA directly activates Flowering Locus T in Arabidopsis thaliana
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REVEILLE8 and PSEUDO-REPONSE REGULATOR5 form a negative feedback loop within the Arabidopsis circadian clock
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The circadian oscillator gene GIGANTEA mediates a long-term response of the Arabidopsis thaliana circadian clock to sucrose
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JMJD5 Functions in concert with TOC1 in the arabidopsis circadian system.
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Jumonji domain protein JMJD5 functions in both the plant and human circadian systems.
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Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana
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Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing
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Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model
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Phylogenetic footprint of the plant clock system in angiosperms: evolutionary processes of pseudo-response regulators
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PRR5 regulates phosphorylation, nuclear import and subnuclear localization of TOC1 in the Arabidopsis circadian clock
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An expanding universe of circadian networks in higher plants
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PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clock.
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Genome-wide mapping of alternative splicing in Arabidopsis thaliana
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28 September 2017
Post-translational modifications in circadian rhythms
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The circadian system in higher plants
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Evidence for the adaptive significance of circadian rhythms
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28 September 2017
A role for casein kinase 2 in the mechanism underlying circadian temperature compensation
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28 September 2017
Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination
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A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock
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The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots.
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In vivo interference with AtTCP20 function induces severe plant growth alterations and deregulates the expression of many genes important for development
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28 September 2017
Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development.
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28 September 2017
Chromatin, photoperiod and the Arabidopsis circadian clock: a question of time.
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28 September 2017
Post-translational regulation of the Arabidopsis circadian clock through selective proteolysis and phosphorylation of pseudo-response regulator proteins.
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28 September 2017
Circadian clock function in Arabidopsis thaliana: time beyond transcription
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28 September 2017
Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules
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28 September 2017
Long and short isoforms of Neurospora clock protein FRQ support temperature-compensated circadian rhythms
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28 September 2017
ZEITLUPE is a circadian photoreceptor stabilized by GIGANTEA in blue light.
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28 September 2017
A complex genetic interaction between Arabidopsis thaliana TOC1 and CCA1/LHY in driving the circadian clock and in output regulation
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Signaling to the circadian clock: plasticity by chromatin remodeling
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28 September 2017
Modulation of environmental responses of plants by circadian clocks.
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28 September 2017
Regulation of output from the plant circadian clock
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28 September 2017
Photoperiodic control of flowering: not only by coincidence
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28 September 2017
Kinase and phosphatase: the cog and spring of the circadian clock
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28 September 2017
Temperature-modulated alternative splicing and promoter use in the Circadian clock gene frequency
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28 September 2017
PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis circadian clock
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28 September 2017
Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage
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28 September 2017
LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms
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PubMed Central
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28 September 2017
Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana.
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28 September 2017
CK2 phosphorylation of CCA1 is necessary for its circadian oscillator function in Arabidopsis
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28 September 2017
PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis.
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28 September 2017
Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock.
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PubMed Central
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28 September 2017
Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
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28 September 2017
The protein kinase CK2 is involved in regulation of circadian rhythms in Arabidopsis.
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PubMed Central
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28 September 2017
Resonating circadian clocks enhance fitness in cyanobacteria
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28 September 2017
Circadian clock mutants in Arabidopsis identified by luciferase imaging
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28 September 2017
EARLY FLOWERING4 recruitment of EARLY FLOWERING3 in the nucleus sustains the Arabidopsis circadian clock
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PubMed Central
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31 May 2018
Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis
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31 May 2018
LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock
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PubMed Central
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31 May 2018
TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana
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31 May 2018
A methyl transferase links the circadian clock to the regulation of alternative splicing
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31 May 2018
GIGANTEA: a circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains.
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31 May 2018
The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering
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31 May 2018
Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression
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PubMed Central
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31 May 2018
Genetic interactions among late-flowering mutants of Arabidopsis
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31 May 2018
A Myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene
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31 May 2018
A role for protein kinase casein kinase2 α-subunits in the Arabidopsis circadian clock
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PubMed Central
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28 November 2018
Cell autonomous and cell-type specific circadian rhythms in Arabidopsis.
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28 November 2018
Phytochrome-interacting factor 4 and 5 (PIF4 and PIF5) activate the homeobox ATHB2 and auxin-inducible IAA29 genes in the coincidence mechanism underlying photoperiodic control of plant growth of Arabidopsis thaliana.
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28 November 2018
Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis.
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28 November 2018
BROTHER OF LUX ARRHYTHMO is a component of the Arabidopsis circadian clock.
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PHYTOCHROME-INTERACTING FACTOR5 as a modulator of auxin signaling in Arabidopsis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Timing of plant immune responses by a central circadian regulator.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
The Jumonji C domain-containing protein JMJ30 regulates period length in the Arabidopsis circadian clock
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Ubiquitination of LHY by SINAT5 regulates flowering time and is inhibited by DET1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
F-box proteins FKF1 and LKP2 act in concert with ZEITLUPE to control Arabidopsis clock progression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Clocks in the green lineage: comparative functional analysis of the circadian architecture of the picoeukaryote ostreococcus.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Involvement of the protein kinase CK2 in the regulation of mammalian circadian rhythms.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Testing time: can ethanol-induced pulses of proposed oscillator components phase shift rhythms in Arabidopsis?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Two new clock proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Comparative transcriptome of diurnally oscillating genes and hormone-responsive genes in Arabidopsis thaliana: insight into circadian clock-controlled daily responses to common ambient stresses in plants
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
PRR3 Is a vascular regulator of TOC1 stability in the Arabidopsis circadian clock
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Targeted degradation of PSEUDO-RESPONSE REGULATOR5 by an SCFZTL complex regulates clock function and photomorphogenesis in Arabidopsis thaliana.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Rhythmic growth explained by coincidence between internal and external cues.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Isolation of circadian-associated genes in Brassica rapa by comparative genomics with Arabidopsis thaliana.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
ELF4 is a phytochrome-regulated component of a negative-feedback loop involving the central oscillator components CCA1 and LHY.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
DET1 regulates the proteasomal degradation of LHY, a component of the Arabidopsis circadian clock
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Circadian-controlled basic/helix-loop-helix factor, PIL6, implicated in light-signal transduction in Arabidopsis thaliana.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Targeted degradation of TOC1 by ZTL modulates circadian function in Arabidopsis thaliana
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
The circadian clock that controls gene expression in Arabidopsis is tissue specific
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Circadian rhythms confer a higher level of fitness to Arabidopsis plants.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
The short-period mutant, toc1-1, alters circadian clock regulation of multiple outputs throughout development in Arabidopsis thaliana.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427731
retrieved
28 November 2018
Phase-specific circadian clock regulatory elements in Arabidopsis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22917516
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22917516
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22917516
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Overlapping and Distinct Roles of PRR7 and PRR9 in the Arabidopsis Circadian Clock
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22917516
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Arabidopsis GIGANTEA protein is post-transcriptionally regulated by light and dark
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22917516
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A functional link between rhythmic changes in chromatin structure and the Arabidopsis biological clock
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22917516
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
LIGHT-REGULATED WD1 and PSEUDO-RESPONSE REGULATOR9 form a positive feedback regulatory loop in the Arabidopsis circadian clock
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22917516
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Molecular phylogeny and expression of poplar circadian clock genes, LHY1 and LHY2
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22917516
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22917516
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22917516
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
EARLY FLOWERING3 encodes a novel protein that regulates circadian clock function and flowering in Arabidopsis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22917516
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22917516
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Evidence for network evolution in an Arabidopsis interactome map.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.CUB.2012.07.025
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/J.CUB.2012.07.025
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1526056
Fatcat ID
release_risxjjtbszh7hnzdyosprgj5fe
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/risxjjtbszh7hnzdyosprgj5fe
retrieved
24 November 2022
based on heuristic
mapped directly with Wikidata item
OpenCitations bibliographic resource ID
1526056
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1526056
PMCID
3427731
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1526056
PubMed ID
22917516
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1526056
ResearchGate publication ID
230732223
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