(Q46188747)

English

Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PHYTOCHROME-INTERACTING FACTOR5 as a modulator of auxin signaling in Arabidopsis

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scholarly article

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Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/21430186

Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PHYTOCHROME-INTERACTING FACTOR5 as a modulator of auxin signaling in Arabidopsis (English)

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/21430186

circadian rhythm

0 references

auxin-activated signaling pathway

1 reference

based on heuristic

inferred from title

2

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/21430186

Julin N. Maloof

3

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/21430186

author name string

Kazunari Nozue

1

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/21430186

language of work or name

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publication date

23 March 2011

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/21430186

number of pages

16

1 reference

based on heuristic

inferred from page(s)

Plant Physiology

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/21430186

156

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/21430186

1

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/21430186

357-372

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/21430186

copyright license

Creative Commons Attribution 4.0 International

25 January 2021

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Genome-wide analysis of light-dependent transcript accumulation patterns during early stages of Arabidopsis seedling deetiolation

1 reference

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The march of the PINs: developmental plasticity by dynamic polar targeting in plant cells

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An integrative model for phytochrome B mediated photomorphogenesis: from protein dynamics to physiology

1 reference

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29 September 2018

Brassinosteroid signal transduction from receptor kinases to transcription factors

1 reference

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29 September 2018

Approaching cellular and molecular resolution of auxin biosynthesis and metabolism

1 reference

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29 September 2018

Inhibition of the shade avoidance response by formation of non-DNA binding bHLH heterodimers

1 reference

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29 September 2018

REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Auxin: a trigger for change in plant development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

High temperature-mediated adaptations in plant architecture require the bHLH transcription factor PIF4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

The circadian clock regulates the photoperiodic response of hypocotyl elongation through a coincidence mechanism in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Regulated proteolysis in light-related signaling pathways

1 reference

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29 September 2018

Making bigger plants: key regulators of final organ size

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

A morning-specific phytohormone gene expression program underlying rhythmic plant growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Molecular interactions between light and hormone signaling to control plant growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Auxin receptors and plant development: a new signaling paradigm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Circadian clock function in Arabidopsis thaliana: time beyond transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Rapid Synthesis of Auxin via a New Tryptophan-Dependent Pathway Is Required for Shade Avoidance in Plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Decoding of light signals by plant phytochromes and their interacting proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Mechanistic duality of transcription factor function in phytochrome signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Light plays an essential role in intracellular distribution of auxin efflux carrier PIN2 in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

A molecular framework for light and gibberellin control of cell elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Coordinated regulation of Arabidopsis thaliana development by light and gibberellins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Genes for control of plant stature and form

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Gibberellin metabolism and its regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

The Arabidopsis circadian clock incorporates a cADPR-based feedback loop.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Understanding gibberellic acid signaling--are we there yet?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis life cycle.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

The basic helix-loop-helix transcription factor PIF5 acts on ethylene biosynthesis and phytochrome signaling by distinct mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Global analysis of della direct targets in early gibberellin signaling in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Phytochrome Interacting Factors: central players in phytochrome-mediated light signaling networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Ubiquitin ligases mediate growth and development by promoting protein death

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

The circadian clock regulates auxin signaling and responses in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Canopy shade causes a rapid and transient arrest in leaf development through auxin-induced cytokinin oxidase activity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Rhythmic growth explained by coincidence between internal and external cues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Phytochrome coordinates Arabidopsis shoot and root development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Light-regulated transcriptional networks in higher plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Modulation of environmental responses of plants by circadian clocks.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

DELLAs contribute to plant photomorphogenesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Ubiquitin, hormones and biotic stress in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments

1 reference

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29 September 2018

Growing up to one's standard

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Opposite root growth phenotypes of hy5 versus hy5 hyh mutants correlate with increased constitutive auxin signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Diurnal regulation of plant growth.

1 reference

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29 September 2018

phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

LONGIFOLIA1 and LONGIFOLIA2, two homologous genes, regulate longitudinal cell elongation in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Cryptochrome signaling in plants.

1 reference

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29 September 2018

The Arabidopsis ARGOS-LIKE gene regulates cell expansion during organ growth.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Novel roles for GIGANTEA revealed under environmental conditions that modify its expression in Arabidopsis and Medicago truncatula.

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29 September 2018

The proteasome: a utility tool for transcription?

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29 September 2018

The WAG1 and WAG2 protein kinases negatively regulate root waving in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Characterization of a novel putative zinc finger gene MIF1: involvement in multiple hormonal regulation of Arabidopsis development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

A dynamic balance between gene activation and repression regulates the shade avoidance response in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Disruption and overexpression of auxin response factor 8 gene of Arabidopsis affect hypocotyl elongation and root growth habit, indicating its possible involvement in auxin homeostasis in light condition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Bioconductor: open software development for computational biology and bioinformatics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Circadian-controlled basic/helix-loop-helix factor, PIL6, implicated in light-signal transduction in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

The photomorphogenesis-related mutant red1 is defective in CYP83B1, a red light-induced gene encoding a cytochrome P450 required for normal auxin homeostasis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Gating of the rapid shade-avoidance response by the circadian clock in plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

The Arabidopsis auxin-inducible gene ARGOS controls lateral organ size

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Lateral relocation of auxin efflux regulator PIN3 mediates tropism in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

A role for flavin monooxygenase-like enzymes in auxin biosynthesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

High temperature promotes auxin-mediated hypocotyl elongation in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091056

29 September 2018

Integration of circadian and phototransduction pathways in the network controlling CAB gene transcription in Arabidopsis

1 reference

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29 September 2018

RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis

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1 December 2018

Shade avoidance responses are mediated by the ATHB-2 HD-zip protein, a negative regulator of gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/21430186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/21430186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hormonal regulation of temperature-induced growth in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/21430186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses

1 reference

https://pubmed.ncbi.nlm.nih.gov/21430186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Convergence of signaling pathways in the control of differential cell growth in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/21430186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Shade avoidance

1 reference

https://pubmed.ncbi.nlm.nih.gov/21430186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Preventing photochemistry in culture media by long-pass light filters alters growth of cultured tissues

1 reference

https://pubmed.ncbi.nlm.nih.gov/21430186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Patterns of expression and normalized levels of the five Arabidopsis phytochromes

1 reference

https://pubmed.ncbi.nlm.nih.gov/21430186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stem Extension Rate in Light-Grown Plants : Effects of Photo- and Thermoperiodic Treatments on the Endogenous Circadian Rhythm in Chenopodium rubrum

1 reference

https://pubmed.ncbi.nlm.nih.gov/21430186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1104/PP.111.172684

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/21430186

release_qgo22tu7dzbdddledwa5xs4jpi

1 reference

https://api.fatcat.wiki/v0/release/qgo22tu7dzbdddledwa5xs4jpi

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/21430186

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