(Q36737162)

16 August 2017

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title

Light-regulated transcriptional networks in higher plants (English)

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16 August 2017

On Sun Lau

2

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Yuling Jiao

object named as

Yuling Jiao

series ordinal

1

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author name string

Xing Wang Deng

series ordinal

3

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16 August 2017

publication date

1 March 2007

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16 August 2017

published in

Nature Reviews Genetics

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16 August 2017

volume

8

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16 August 2017

issue

3

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16 August 2017

page(s)

217-230

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https://scigraph.springernature.com/pub.10.1038/nrg2049

16 August 2017

exact match

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cites work

Light signal transduction in higher plants

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Multiple transcription-factor genes are early targets of phytochrome A signaling

31 March 2020

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Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways.

31 March 2020

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Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis.

31 March 2020

1 reference

Phytochrome photosensory signalling networks

31 March 2020

1 reference

Cryptochrome Structure and Signal Transduction

31 March 2020

1 reference

An Arabidopsis protein closely related to Synechocystis cryptochrome is targeted to organelles

31 March 2020

1 reference

Phytochrome phosphorylation modulates light signaling by influencing the protein-protein interaction.

31 March 2020

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Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer.

31 March 2020

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Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation.

31 March 2020

1 reference

Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry

31 March 2020

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Dimers of the N-terminal domain of phytochrome B are functional in the nucleus.

31 March 2020

1 reference

N-terminal domain-mediated homodimerization is required for photoreceptor activity of Arabidopsis CRYPTOCHROME 1.

31 March 2020

1 reference

Arabidopsis NPH1: a flavoprotein with the properties of a photoreceptor for phototropism.

31 March 2020

1 reference

Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin.

31 March 2020

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Functional analysis of a light-responsive plant bZIP transcriptional regulator

31 March 2020

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DNA binding activity of the Arabidopsis G-box binding factor GBF1 is stimulated by phosphorylation by casein kinase II from broccoli

31 March 2020

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Reconstitution of Arabidopsis casein kinase II from recombinant subunits and phosphorylation of transcription factor GBF1.

31 March 2020

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Light-regulated modification and nuclear translocation of cytosolic G-box binding factors in parsley

31 March 2020

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Nuclear import of the parsley bZIP transcription factor CPRF2 is regulated by phytochrome photoreceptors

31 March 2020

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Phosphorylation of the parsley bZIP transcription factor CPRF2 is regulated by light

31 March 2020

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Targeted destabilization of HY5 during light-regulated development of Arabidopsis.

31 March 2020

1 reference

COP1 - from plant photomorphogenesis to mammalian tumorigenesis

31 March 2020

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LAF1 ubiquitination by COP1 controls photomorphogenesis and is stimulated by SPA1

31 March 2020

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Light inactivation of Arabidopsis photomorphogenic repressor COP1 involves a cell-specific regulation of its nucleocytoplasmic partitioning

31 March 2020

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bZIP transcription factors in Arabidopsis

31 March 2020

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The Arabidopsis basic/helix-loop-helix transcription factor family.

31 March 2020

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Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis

31 March 2020

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Transactivation properties of parsley proline-rich bZIP transcription factors

31 March 2020

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PcMYB1, a novel plant protein containing a DNA-binding domain with one MYB repeat, interacts in vivo with a light-regulatory promoter unit

31 March 2020

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Comprehensive identification of Arabidopsis thaliana MYB transcription factors interacting with R/B-like BHLH proteins

31 March 2020

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EVOLUTION OF LIGHT-REGULATED PLANT PROMOTERS.

31 March 2020

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Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data

31 March 2020

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A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development.

31 March 2020

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Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation

31 March 2020

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Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes

31 March 2020

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phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation

31 March 2020

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Analysis of far-red light-regulated genome expression profiles of phytochrome A pathway mutants in Arabidopsis.

31 March 2020

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Light-signalling pathways leading to the co-ordinated expression of HEMA1 and Lhcb during chloroplast development in Arabidopsis thaliana

31 March 2020

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The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signaling

31 March 2020

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Arabidopsis FHY3 defines a key phytochrome A signaling component directly interacting with its homologous partner FAR1.

31 March 2020

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The FHY3 and FAR1 genes encode transposase‐related proteins involved in regulation of gene expression by the phytochrome A‐signaling pathway

31 March 2020

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LAF1, a MYB transcription activator for phytochrome A signaling

31 March 2020

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HFR1, a putative bHLH transcription factor, mediates both phytochrome A and cryptochrome signalling.

31 March 2020

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REP1, a basic helix-loop-helix protein, is required for a branch pathway of phytochrome A signaling in arabidopsis

31 March 2020

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Cloning of the Arabidopsis RSF1 gene by using a mapping strategy based on high-density DNA arrays and denaturing high-performance liquid chromatography

31 March 2020

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HFR1, a phytochrome A-signalling component, acts in a separate pathway from HY5, downstream of COP1 in Arabidopsis thaliana

31 March 2020

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Overexpression of a mutant basic helix-loop-helix protein HFR1, HFR1-deltaN105, activates a branch pathway of light signaling in Arabidopsis.

31 March 2020

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The Arabidopsis COG1 gene encodes a Dof domain transcription factor and negatively regulates phytochrome signaling.

31 March 2020

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The Dof transcription factor OBP3 modulates phytochrome and cryptochrome signaling in Arabidopsis.

31 March 2020

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A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth

31 March 2020

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A basic leucine zipper transcription factor, G-box-binding factor 1, regulates blue light-mediated photomorphogenic growth in Arabidopsis

31 March 2020

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A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors.

31 March 2020

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PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein.

31 March 2020

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Phytochrome B binds with greater apparent affinity than phytochrome A to the basic helix-loop-helix factor PIF3 in a reaction requiring the PAS domain of PIF3.

31 March 2020

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PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis.

31 March 2020

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Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis.

31 March 2020

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PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana.

31 March 2020

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Functional Characterization of Phytochrome Interacting Factor 3 in Phytochrome-Mediated Light Signal Transduction

31 March 2020

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Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis

31 March 2020

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Circadian-controlled basic/helix-loop-helix factor, PIL6, implicated in light-signal transduction in Arabidopsis thaliana.

31 March 2020

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The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development

31 March 2020

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PIF1 is regulated by light-mediated degradation through the ubiquitin-26S proteasome pathway to optimize photomorphogenesis of seedlings in Arabidopsis

31 March 2020

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A UV-B-specific signaling component orchestrates plant UV protection

31 March 2020

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CONSTITUTIVELY PHOTOMORPHOGENIC1 is required for the UV-B response in Arabidopsis

31 March 2020

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The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl

31 March 2020

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Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis.

31 March 2020

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HY5 stability and activity in arabidopsis is regulated by phosphorylation in its COP1 binding domain

31 March 2020

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Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development

31 March 2020

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Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression.

31 March 2020

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Genomic evidence for COP1 as a repressor of light-regulated gene expression and development in Arabidopsis.

31 March 2020

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31 March 2020

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The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering

31 March 2020

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Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression

31 March 2020

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Organ-specific expression of Arabidopsis genome during development.

31 March 2020

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Functional profiling reveals that only a small number of phytochrome-regulated early-response genes in Arabidopsis are necessary for optimal deetiolation

31 March 2020

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A DNA binding activity for one of two closely defined phytochrome regulatory elements in an Lhcb promoter is more abundant in etiolated than in green plants

31 March 2020

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Combinatorial interaction of light-responsive elements plays a critical role in determining the response characteristics of light-regulated promoters in Arabidopsis.

31 March 2020

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Targeted histone acetylation and altered nuclease accessibility over short regions of the pea plastocyanin gene

31 March 2020

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The transcriptional enhancer of the pea plastocyanin gene associates with the nuclear matrix and regulates gene expression through histone acetylation

31 March 2020

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Arabidopsis HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1, is required to integrate light signals to regulate gene expression and growth.

31 March 2020

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Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression

31 March 2020

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Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light

31 March 2020

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DET1, a negative regulator of light-mediated development and gene expression in arabidopsis, encodes a novel nuclear-localized protein

31 March 2020

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De-etiolated 1 and damaged DNA binding protein 1 interact to regulate Arabidopsis photomorphogenesis

31 March 2020

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Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes

31 March 2020

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The Photomorphogenesis Regulator DET1 Binds the Amino-Terminal Tail of Histone H2B in a Nucleosome Context

31 March 2020

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The maternal effect gene, abnormal oocyte (abo), of Drosophila melanogaster encodes a specific negative regulator of histones

31 March 2020

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HY5, Circadian Clock-Associated 1, and a cis-Element, DET1 Dark Response Element, Mediate DET1 Regulation ofChlorophyll a/b-Binding Protein 2Expression

31 March 2020

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Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis.

31 March 2020

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Identification of primary target genes of phytochrome signaling. Early transcriptional control during shade avoidance responses in Arabidopsis

31 March 2020

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A dynamic balance between gene activation and repression regulates the shade avoidance response in Arabidopsis

31 March 2020

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The Arabidopsis Athb-2 and -4 genes are strongly induced by far-red-rich light.

31 March 2020

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Negative autoregulation of the Arabidopsis homeobox gene ATHB-2

31 March 2020

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Gating of the rapid shade-avoidance response by the circadian clock in plants.

31 March 2020

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A genomic analysis of the shade avoidance response in Arabidopsis

31 March 2020

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A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana

31 March 2020

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Extension of a genetic network model by iterative experimentation and mathematical analysis

31 March 2020

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A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9.

31 March 2020

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Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana

31 March 2020

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Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog

31 March 2020

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Orchestrated transcription of key pathways in Arabidopsis by the circadian clock

31 March 2020

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Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock.

31 March 2020

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Critical Role for CCA1 and LHY in Maintaining Circadian Rhythmicity in Arabidopsis

31 March 2020

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The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana

31 March 2020

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LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis

31 March 2020

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ELF4 is a phytochrome-regulated component of a negative-feedback loop involving the central oscillator components CCA1 and LHY.

31 March 2020

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Distinct roles of GIGANTEA in promoting flowering and regulating circadian rhythms in Arabidopsis

31 March 2020

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LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms

31 March 2020

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PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis circadian clock

31 March 2020

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Overlapping and Distinct Roles of PRR7 and PRR9 in the Arabidopsis Circadian Clock

31 March 2020

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The Arabidopsis pseudo-response regulators, PRR5 and PRR7, coordinately play essential roles for circadian clock function.

31 March 2020

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PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, together play essential roles close to the circadian clock of Arabidopsis thaliana.

31 March 2020

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ELF3 encodes a circadian clock-regulated nuclear protein that functions in an Arabidopsis PHYB signal transduction pathway

31 March 2020

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ELF3 modulates resetting of the circadian clock in Arabidopsis.

31 March 2020

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Arabidopsis FHY3 specifically gates phytochrome signaling to the circadian clock.

31 March 2020

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Functional characterization of phytochrome interacting factor 3 for the Arabidopsis thaliana circadian clockwork.

31 March 2020

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ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis

31 March 2020

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An Arabidopsis circadian clock component interacts with both CRY1 and phyB.

31 March 2020

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A role for LKP2 in the circadian clock of Arabidopsis.

31 March 2020

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Targeted degradation of TOC1 by ZTL modulates circadian function in Arabidopsis thaliana

31 March 2020

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Formation of an SCF(ZTL) complex is required for proper regulation of circadian timing

31 March 2020

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FKF1 is essential for photoperiodic-specific light signalling in Arabidopsis

31 March 2020

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Integration of circadian and phototransduction pathways in the network controlling CAB gene transcription in Arabidopsis

31 March 2020

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GIGANTEA is a nuclear protein involved in phytochrome signaling in Arabidopsis

31 March 2020

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Two Arabidopsis circadian oscillators can be distinguished by differential temperature sensitivity

31 March 2020

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PSEUDO-RESPONSE REGULATOR 7 and 9 are partially redundant genes essential for the temperature responsiveness of the Arabidopsis circadian clock

31 March 2020

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The molecular basis of temperature compensation in the Arabidopsis circadian clock

31 March 2020

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Changes in photoperiod or temperature alter the functional relationships between phytochromes and reveal roles for phyD and phyE.

31 March 2020

1 reference

The phytochrome gene family in grasses (Poaceae): a phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms

31 March 2020

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Patterns of expression and normalized levels of the five Arabidopsis phytochromes

31 March 2020

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The histidine kinase-related domain participates in phytochrome B function but is dispensable

31 March 2020

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Identification of a new cryptochrome class. Structure, function, and evolution

31 March 2020

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Role of structural plasticity in signal transduction by the cryptochrome blue-light photoreceptor

31 March 2020

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The C termini of Arabidopsis cryptochromes mediate a constitutive light response.

31 March 2020

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Direct interaction of Arabidopsis cryptochromes with COP1 in light control development.

31 March 2020

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The signaling mechanism of Arabidopsis CRY1 involves direct interaction with COP1.

31 March 2020

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Phototropins 1 and 2: versatile plant blue-light receptors.

31 March 2020

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Seed dormancy and germination

31 March 2020

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Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice.

31 March 2020

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The COP1-SPA1 interaction defines a critical step in phytochrome A-mediated regulation of HY5 activity

31 March 2020

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31 March 2020

Identifiers

DOI

10.1038/NRG2049

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release_e6yobs5ncnedzlmmyik7uxtgbe

16 August 2017

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/e6yobs5ncnedzlmmyik7uxtgbe

mapped directly with Wikidata item

24 November 2022

based on heuristic

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